Nicotiana attenuata (coyote tobacco): 109213340
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Entry
109213340 CDS
T05870
Name
(RefSeq) uncharacterized protein LOC109213340
KO
K10643
CCR4-NOT transcription complex subunit 4 [EC:
2.3.2.27
]
Organism
nau
Nicotiana attenuata (coyote tobacco)
Pathway
nau03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nau00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109213340
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
nau03000
]
109213340
03019 Messenger RNA biogenesis [BR:
nau03019
]
109213340
04121 Ubiquitin system [BR:
nau04121
]
109213340
Enzymes [BR:
nau01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
109213340
Transcription factors [BR:
nau03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
109213340
Messenger RNA biogenesis [BR:
nau03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
109213340
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
109213340
Ubiquitin system [BR:
nau04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
109213340
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_4
RRM_1
Baculo_IE-1
zf-UDP
FYVE
Motif
Other DBs
NCBI-GeneID:
109213340
NCBI-ProteinID:
XP_019232680
UniProt:
A0A1J6IPS0
LinkDB
All DBs
Position
2:78147637..78155733
Genome browser
AA seq
862 aa
AA seq
DB search
MSNEEEKRCPLCAEEMDWTDQQFKPCKCGYQVCLWCWHHIMDMAEKDESEGRCPACRTTY
EKEKVVKMQANIERAGSNNVHRKSKQPKAKPKTNEIKKDLTNVRVIQRKMAYVIGLPLSL
ADEDLLQRKEYFGQYGKVTKISLSRTTGGAIQQFVTDTCSVYITYSKEEEAVRCIQSVHG
FVLEDRYLRASFGTAKYCHAWLRNMPCGNPSCLYLHSIGADEDSFGKDDAAAIHTRNRVQ
QIVGDISNMTNRSGNVLPPPIDELSNTSTEKSSIRNATSDAANDAVNYSSYTAHGIPYDK
DVDSGVPNRMTTFVDIVGRSNTSGAERDGNSSEDCRILDLSSDLSSVTITNDNHGHETYP
NTTLFKVSSSSHLVNNLWGNQNSVEFSDEPFREHYVSSDDQGLKDSNSVAQRAFLMSSRS
AQSTEDSGDHSLVHKSYSPSSNGRDFGALHNQVDEASLPFSCVNAILNEGIHDMKFQSSV
KSDRVYRSSTSFSNEEIVQHLRRVDSDNSTNYVDSSLNAVESSIISNIMSIDFDSCDDSM
ALRRSFAGSYNESDGKLGATWNSLHNDQSGFSFVKQDDFSRQGCELESPFSNIGQVSKNS
SIPQDFRENKDQYVQKASYQITRTKVLAPPGFSMPSGDLLRSFASSDEIGRIPRALSGSH
SVNISSSLLHTPSTGSISSAGDIDFVEPAISSCGSGKPTNGFDISAREIGSACVPQRRAF
EDEARIWHLMQQKSVDQEGKFSQVFASQTPSVHQLQRFPGHGGDEYFGLDDIYGFSSMVN
RHQSFDPSPYSQFPQQKLANGNIFNGFQHNSFRDIHHSNEVDCLTELQKNERLGFKNFYA
GYGDIMFQAPRSGDVYTRVFGM
NT seq
2589 nt
NT seq
+upstream
nt +downstream
nt
atgagcaatgaagaagagaaaaggtgtcctctttgtgccgaagagatggactggacagat
cagcagtttaagccttgtaaatgtggttatcaggtgtgtctttggtgttggcatcacata
atggacatggcagaaaaagacgagtcagagggtcgatgtcctgcatgtcgaacaacatat
gaaaaagagaaagttgttaaaatgcaagcaaatattgagagagcagggagcaacaatgtc
caccggaaaagcaaacaaccaaaagcaaagccaaaaactaatgaaatcaagaaggatctc
acaaatgttcgggtcattcaacgtaaaatggcatatgtgattgggctgcctcttagtctt
gcagatgaagatcttttacagcggaaagaatattttgggcagtatggaaaagttactaaa
atttctctttctcggacgactggtggtgcaattcagcaatttgttactgatacctgtagt
gtatatattacgtattcaaaagaagaggaggccgtacgatgtattcaatctgtacatggt
tttgtcttggaagataggtatttgagagcatcctttgggactgcaaagtactgccatgcg
tggttgagaaacatgccttgcggtaatccttcttgtctatatttgcatagcattggtgct
gatgaagatagttttggtaaagatgatgcagctgcaattcatacaaggaatagagttcaa
caaattgttggcgacatcagtaatatgacgaatcgctcaggaaatgtcttgccacctccg
attgatgaattatcgaatacatcgactgagaaatctagcattagaaatgcaacaagtgat
gcagcaaatgatgcagttaattacagtagctacacggctcatggaattccttatgataag
gatgtagattctggtgtgccgaaccgaatgacaacttttgtagatattgttggacggtcc
aacacttcaggtgcagagagagatggaaatagcagtgaagattgtaggattttggattta
tcttctgacctatcttcagtaaccattactaatgataatcatggtcatgaaacatatccg
aacacaactctgttcaaagtttcatcttcaagtcaccttgtcaataatctgtgggggaac
caaaattctgttgaattttctgatgaaccattcagggaacattatgtgtcttctgatgat
caaggactgaaggattcaaatagcgtggctcaaagggcttttcttatgtcatctcgttct
gctcaatccacagaggactccggtgatcattcattagtacataagtcatatagtccgagt
agcaatggaagggattttggagctttacataatcaagtggatgaagcttctctgccattt
tcatgtgtaaatgcaatattaaatgaaggaatacatgatatgaaattccaaagttctgtc
aaatctgatagggtttacagaagttctacctcattctccaatgaagaaatagtgcagcac
ctacggagggttgatagtgataactcgactaactatgtggattcatcactcaatgctgta
gaaagcagtattatttcaaatattatgtcaatcgactttgattcatgtgatgattcaatg
gccttgcgtcgtagctttgctggctcgtataatgaatctgatgggaagcttggtgctacc
tggaactctttgcacaatgatcaatcggggttctctttcgtgaagcaagatgacttttca
aggcaagggtgtgaattagagtctccttttagtaatattggtcaggtatcaaagaattca
tccatccctcaagatttcagagagaacaaggatcagtatgtgcagaaggcttcgtatcaa
atcactagaacaaaagttttggctccacctggattttcaatgccctctggggacctgctt
cgcagttttgcctcatctgatgaaataggacgaatccctcgtgctctctccggaagtcat
tcagtaaatatttcatcaagtttgcttcacacaccatcaactggaagtattagcagtgca
ggtgatattgattttgttgaacctgccatatcaagctgtggaagcggcaagccgacaaat
ggttttgatatctctgcccgggaaatcgggtcagcttgtgtaccacagaggagagccttt
gaagacgaggcaagaatctggcatttgatgcaacaaaaatctgtagatcaagaagggaaa
ttctctcaagtttttgcttcacaaacaccatctgttcatcaattacaaagatttcctggt
catggcggggatgaatattttggtctagatgatatatatggcttctcatcgatggtcaac
cgacaccaaagttttgatccatctccctattcacagtttccacaacaaaagcttgccaat
ggtaacatctttaatggcttccagcacaatagtttccgcgatatccatcatagtaatgaa
gtagactgcttgacagaactccagaaaaatgagagattaggtttcaaaaatttctatgct
ggatatggagatattatgttccaggcgcccaggtctggcgatgtatacaccagagttttt
ggaatgtaa
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