Nicotiana attenuata (coyote tobacco): 109213418
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Entry
109213418 CDS
T05870
Name
(RefSeq) uncharacterized protein LOC109213418 isoform X1
KO
K12830
splicing factor 3B subunit 3
Organism
nau
Nicotiana attenuata (coyote tobacco)
Pathway
nau03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
nau00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109213418
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nau03021
]
109213418
03041 Spliceosome [BR:
nau03041
]
109213418
03036 Chromosome and associated proteins [BR:
nau03036
]
109213418
Transcription machinery [BR:
nau03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
109213418
Spliceosome [BR:
nau03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
109213418
Complex B
109213418
Complex C
U2 SnRNP specific factors
109213418
Chromosome and associated proteins [BR:
nau03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
109213418
TFTC complex
109213418
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_2nd
Beta-prop_RSE1_1st
CPSF_A
Motif
Other DBs
NCBI-GeneID:
109213418
NCBI-ProteinID:
XP_019232757
LinkDB
All DBs
Position
Unknown
AA seq
1463 aa
AA seq
DB search
MAVSEEESSSSSSAGCSSKSQSAASRGASYLAKTVLRGSVVLQVVYGRIRSSTSYDVVLG
KETSVELVIIDEDGIVQSICEQPVFGIIKDIAVLPWNEKFPAGSPQLLSKDLLVVISDSG
KLSVLRFCNEMHRFFAVTHVQLSSPGNPRHQIGRMLAIDSSGCFIAASAYEDRLALFSRS
ASAGSDILDKRIFCPTDNQGKIETASGFTSICGTIWSMCFISTDVRQPNKEHNPVLAILL
NRRRSYRTELMLIEWNMKEHSLHVIYQYSEPGPLAHHIVEVPHSYGILLVFRAGDAIVMD
FRDPHSPCFLYRISLNFTPPSVEEQNFVEEAIRIPDIIDEDGMYSVAASALLELSDLNKN
DPMNIDDDSNVKPGSNFVCSWSWNPGNDHSPRMIFCADSGELFLIDFLFDSDGLKISLSD
CLYKTQPAKALLWVRGGFLAVIIEMGDGMVLKVEEGKLVYRSPIQNIAPILDMSVVDYHD
EKHDQMFACCGMAPEGSLRVIRSGISVEKLLRTAPIYQGITGTWTVKMKMADSYHSFLVL
SFVEETRVLSVGVSFSDVTDFMGFQPDVCTLACGLVGDGLLVQIHQTAVRLCVPTIAAHP
DGIDSSSPTFTSWSPDNMTISLGAVGPNLIVVATSSPCFLFILGIRTLSAHHKEIYQMKH
VRLQDELSCISIPRLEQTPFISKTSHTNGVPLDSLPSGLDISNTFIIGTHKPSVEVLSFT
SDKGVNVLAIGSITLTNTLGTTISGCIPQDVRLVLVDRLYVLSGLRNGMLLRFEWPSASI
IASLESPGLQTFDNSCMANSSGSSTFASQNFRTQPMQVSSLLDKTKDSPVYLQLVAVRRI
GITPVFLVPLNDSLDADVIALSDRPWLLQTARHSLSYTSISFPPSTHVTPVCSTECPKGI
IFVAENSLHLVEMVPSKRLNVQKFHFGGTPRKVLYHSDSRLLLVLRTDLSDDLCSSDVCC
VDPLSGSVLSSFKFEPGEIGKCMELVKVGYEQVLVVGTSLSTGPAIMPSGEAESTKGRLI
VLCIEQMQHSDSGSIAFSSRAGSSSQRTSPFREIGGYAAEQLSSSSLCSSPDDNSCDGIK
LEESEAWHLRLGYSTTWPGMVLAVCPYLDRYFLASAGNCFYVCGFPNDNAQRVRRLAVGR
TRFMIMTLTAHFTRIAVGDCRDGVLFYSYQEDARKLEQVYCDPVQRLVADCTLMDVDTAA
VSDRKGSLSILSCLNHSEDNSSPECNLALTCSFYMGEIAMRVRKVHFPIGDNCWMPYGVV
VQKVDTMHTIGYIEDGKSDTGVNHGTCDRPENLIVADISYFKGSEKTKDLLLHCKGSFSY
KLPADDALKGCQVARNVGDISQNSIMASTLLGSIIIFIPLTREEYDLLEAVQARLVIHPL
TAPILGNDHAEFRCRGSLARAPKALDGDMLAQFLELTSMQQEAVLALPLGAQNTITFNSK
QSPPPVTVNQVVRLLERVHYALN
NT seq
4392 nt
NT seq
+upstream
nt +downstream
nt
atggcggtttcggaggaagaatcctcgtcttcatcctctgccggttgcagcagcaagtca
caatcagctgcttctcgtggcgcctcttatttagctaagactgttctcagaggtagtgtt
gttctgcaagtcgtttatggccgtatccgctcttctacttcatacgacgtcgttcttggc
aaggaaacatctgtagagttggtgattatagatgaagatggaattgtgcaatctatctgt
gagcagcctgtatttggcataataaaagatatagctgtgctgccctggaatgagaagttc
cctgctggaagcccgcagcttttgagcaaggatctcctggttgttatttcggattcaggg
aagctctcagttctcagattttgcaatgaaatgcacaggtttttcgctgtaacacatgtt
caactttcatctcctggaaatccaaggcatcaaattggaaggatgttggctattgattcc
agtggctgtttcattgctgctagtgcatatgaagacagattggctcttttctcccgctct
gcttcagctggcagtgatatacttgataagagaatcttttgtccgactgacaatcaaggg
aagattgagactgccagtggtttcaccagtatctgtggtaccatatggagcatgtgcttc
atctcaacagatgttcgtcaaccaaataaggagcacaatcctgtattggccattcttctc
aataggaggagatcatataggactgagctcatgttgatagagtggaatatgaaggagcat
tcactccatgtaatatatcagtattctgaacctggaccactagcacatcatatcgtagaa
gttcctcattcttatggaatcctgttagtatttcgtgctggggatgctattgtgatggac
tttagagatcctcacagcccttgttttctttatcgaataagtttaaattttacaccacct
tcagttgaggagcagaattttgtagaagaggctattagaattcccgatattattgacgaa
gacggtatgtatagcgttgctgcatctgcattgcttgagcttagcgacttgaataaaaat
gacccaatgaacattgatgatgatagcaatgtaaaaccgggttcaaattttgtctgctca
tggagttggaatcctggaaatgatcacagtcctaggatgatattttgtgctgattctgga
gagcttttcctgattgattttttatttgattctgatggcctgaaaatatctctgtctgat
tgtctttacaagactcaaccagccaaggcacttttgtgggtgagaggtgggtttttggca
gttatcattgagatgggtgatgggatggtgttaaaagttgaagagggaaaacttgtttat
agaagtccaatccaaaatatcgcaccaatattggatatgtccgttgtggattaccatgat
gagaaacatgatcaaatgtttgcctgctgtgggatggcacctgaaggatctttacgagtt
atacgcagtggcatcagcgtagagaaattgttgagaactgcacctatttatcagggtatt
actggaacttggactgtgaaaatgaaaatggctgattcttatcattctttccttgtacta
tcatttgttgaagagaccagggttctatctgttggtgtgagcttttctgatgtaactgac
ttcatgggtttccagccggatgtttgcacgttggcttgtggtcttgtgggcgatggttta
ctggtgcaaatccaccagactgctgtgagactgtgtgtacctactattgctgcacatcca
gatggtattgattcgtcatcaccaactttcacctcatggtcccctgataatatgacaata
agccttggagctgttgggcctaatttgatagttgttgcaacttccagtccatgcttctta
tttattcttggcatcaggaccttatcagcccatcataaagaaatataccagatgaaacat
gtgagattgcaagatgaactatcctgcatttcaatcccccggcttgagcaaacacctttt
atatctaaaactagtcatacaaatggagttcctttggattctcttccatccggattggac
attagtaacaccttcattattggtacacataagccttctgtggaagttctgtcatttact
tctgataaaggcgtgaatgttcttgccattgggtctataaccttaacaaacactcttgga
acaaccataagtggctgcattcctcaagatgtaagacttgtactcgttgatcggctttat
gttctttcaggattaaggaacggtatgctactcagatttgagtggccctctgcctcgata
attgcctcacttgagtcgcctggccttcaaacttttgacaattcttgtatggctaattcc
agtggttcctcaacttttgcatctcagaattttagaactcaacctatgcaagtgtccagt
ttattggataagacgaaggattctcctgtttatctgcaattagttgcagttcgtcggatt
ggcataactcctgtttttctggttccattgaatgactctcttgatgctgatgtgatcgct
ctaagcgataggccctggttattgcaaactgcaaggcatagcctctcgtatacttcaatc
tcttttccaccttccacacatgttactccagtctgttcaactgaatgtcccaagggaatt
atctttgttgctgaaaacagtcttcatttggtggagatggtgcctagtaaacggcttaat
gtgcagaaatttcattttggcggcactcctcgaaaggttctatatcatagtgacagtagg
ttgttgcttgtattacggactgatctcagtgatgatttatgttcatctgatgtctgttgc
gtagatcctctcagcggatcggtgttgtcttcctttaagtttgagccaggggagatagga
aaatgcatggagttggtaaaagttggatacgaacaagttcttgttgttggaactagtctc
tctactggtccagctataatgcctagtggtgaagctgaaagcacaaagggccgtctaata
gttctttgcatcgagcaaatgcaacactcggatagtgggtcaattgcattttcttcaagg
gctggatcgtcttctcaacgtacttcacctttccgtgagattggtggatatgccgctgaa
cagctgtctagcagtagtctttgtagcagtcctgacgataacagctgtgacgggattaaa
cttgaggaaagtgaggcatggcacttaagattaggttattcaaccacctggcctggaatg
gtgcttgcagtctgcccataccttgatcgttatttcttggcctctgcgggcaactgtttt
tatgtttgtggttttccaaatgataatgctcaaagagtcagacgcttagcagtagggaga
acacgtttcatgatcatgactcttactgcacacttcactagaattgctgttggtgattgc
cgtgatggtgtcctcttctattcgtatcaagaggatgcgagaaaactagagcaagtttac
tgtgaccctgtccagaggttagttgctgattgcactcttatggatgtagacacagctgct
gtttcagatcgaaaggggagtctatccattttatcatgtttgaatcactcagaagataat
tccagtccagaatgcaatctagctctaacttgttcattctacatgggtgagatagctatg
agagttcgaaaggtgcactttcctataggagataattgttggatgccttatggtgttgtg
gtccagaaagtagatacaatgcataccataggatatatagaagatggcaaatccgacact
ggcgtgaaccacggaacttgtgatagaccagaaaatttgattgtagctgatatttcatat
ttcaagggatctgaaaagacaaaagaccttttactgcattgcaaggggtcattctcttat
aaacttccagcagatgatgcacttaagggctgtcaagttgcccgcaatgtcggtgacata
tcacaaaatagtatcatggctagtacacttttagggagcataattattttcattcctctt
actagggaggaatatgatctcttagaagcggtacaggctaggcttgtcatccatccattg
actgctcctatattgggaaatgaccacgctgaatttcgctgtcgtgggagtctggctagg
gcacctaaagctctggatggtgatatgcttgctcagttcttggagcttactagtatgcaa
caagaagctgtattagcattgcctcttggtgcacaaaacacaattacgttcaattcaaag
caatctcctcctccagttactgtcaatcaggttgtgcggctgctagaacgtgttcattat
gccctgaactga
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integrated database retrieval system
