Nicotiana attenuata (coyote tobacco): 109213496
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Entry
109213496 CDS
T05870
Name
(RefSeq) probable rhamnogalacturonate lyase B
KO
K18195
rhamnogalacturonan endolyase [EC:
4.2.2.23
]
Organism
nau
Nicotiana attenuata (coyote tobacco)
Brite
KEGG Orthology (KO) [BR:
nau00001
]
09190 Not Included in Pathway or Brite
09191 Unclassified: metabolism
99980 Enzymes with EC numbers
109213496
Enzymes [BR:
nau01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.23 rhamnogalacturonan endolyase
109213496
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Gene cluster
GFIT
Motif
Pfam:
Rhamnogal_lyase
CBM-like
fn3_3
CarboxypepD_reg
RhgB_N
CarbopepD_reg_2
EMC7_beta-sandw
BsuPI
Motif
Other DBs
NCBI-GeneID:
109213496
NCBI-ProteinID:
XP_019232849
LinkDB
All DBs
Position
Unknown
AA seq
589 aa
AA seq
DB search
MTISGIGMLSGIILDLRQLEKSNLSLSLWFSATSFEVIIDNENQTEISFKRTWNASQSDE
PPLNIDKRYIMLRDAPGFYTYSIVERLEGWPLSYIQNLRIVFKLQEDMFHYMAVSDERQR
VMPMEVDRKTGEVLDYKEAVLLTNPTNPDLKGEVDDKYFYTNDNKDGKVYGWVSANPPVG
FWMIIPSNEFRTGGPFRQDITTHVGPTVLSVFVSTHYAGEDLAIKFQQGEPWKKVIGPVF
VYLNSDGSAKDNPSILWDDAKKRMNEEVASWPYDFPVSKDYNKSNQRGTVRGQIFVNDRF
ISKQDVPASNAYIGLAPPGDAGSWQRENKGYQFWTKADANGNFTIENIISGTYNLYATVP
GFIGDYKYTSNVQVTPGSSIKLGSLVYKPPRKGATLWEIGVPDRTAAEFFIPNAPPQYKV
HKYKNNSESIFRQYGLWKQYSVLYPTNDLVYNVETSNYSRDWFYAQVTRNVGINIFNATT
WRIIFNLTSVDKASNYTLQLALAAAHEAELQVHINDEKAQEPHFTTGFIGGENAIARHGI
HGLYWLYSIGIQGNLLSKGANTIFLTQTIALTPYQGVMYDYLRLEGPHQ
NT seq
1770 nt
NT seq
+upstream
nt +downstream
nt
atgacaatttcaggtattgggatgttatctggaataatactggacctcagacaactcgaa
aaaagtaatctgtctttatctctctggttttcagcaacaagttttgaagtcataatagac
aatgaaaatcagacagaaatttcatttaaaagaacgtggaatgcttctcaatctgatgaa
ccacccttaaacattgacaaaaggtatataatgctacgcgacgcgccaggattttatact
tactcaatcgttgaacgtttagaaggatggccactttcgtatatccaaaatctcaggatt
gtgttcaagcttcaagaagacatgtttcactacatggctgtctctgacgagaggcaacgg
gtcatgccaatggaagtggatcgaaagactggcgaggtgctcgactacaaagaagctgtt
cttcttactaacccgactaatccagatttaaaaggagaggtggatgacaagtatttctat
acaaatgataacaaagacggtaaagtttatggatgggtgagtgcaaatcctccagtagga
ttttggatgattattccaagcaatgaatttcgtactggaggaccatttagacaagacatt
actacacatgttggtccaactgtactttctgtatttgttagtacacattatgcaggagag
gatttagctataaaatttcaacaaggagaaccatggaaaaaagttattggccctgtgttt
gtgtatcttaattcagatggttcagctaaggacaatccctccatactttgggatgatgct
aagaaaaggatgaatgaagaagtcgcaagctggccctatgattttccagtttcaaaagac
tacaacaaatctaatcaaagaggaacagttagaggccaaatatttgttaatgacagattt
atcagtaaacaagatgtgccggcttccaatgcctatattggtttagctccaccaggagat
gctggatcttggcaaagagaaaacaaaggatatcagttctggactaaagcagacgctaat
gggaattttaccatagaaaatattatatccggtacatataacttatatgcaacagtccca
ggatttattggtgattacaaatacacttcaaatgtacaagtaactccaggttctagtatt
aaattagggagtttggtgtataaacctccaagaaaaggagccacactatgggaaattgga
gtgccagatcgaactgcagctgaattctttattccaaatgcacctccacaatataaagtt
cacaaatacaaaaacaactctgaatcaatttttcgacagtatggtttgtggaaacaatac
agtgttttatatcctacaaatgatctagtttacaatgttgagactagcaattattcaaga
gactggttttatgctcaagttactaggaatgtaggaatcaacatatttaatgctaccaca
tggagaattatattcaatcttaccagtgttgacaaggcctcaaattacactctccaactt
gctcttgctgcagctcatgaagctgaattacaagttcatataaacgatgaaaaagcgcaa
gaaccccattttacaacaggatttatagggggagaaaatgcaattgcaagacatggtata
catggattatattggctttatagcattggaatacaaggcaatttgcttagtaaaggagca
aacacaatttttcttacacaaacaatagctctcactccctatcaaggagtcatgtatgat
tatcttcgtttagaaggacctcatcagtga
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