KEGG   Nicotiana attenuata (coyote tobacco): 109214000
Entry
109214000         CDS       T05870                                 
Name
(RefSeq) putative E3 ubiquitin-protein ligase RING1a
  KO
K10695  E3 ubiquitin-protein ligase RNF1/2 [EC:2.3.2.27]
Organism
nau  Nicotiana attenuata (coyote tobacco)
Pathway
nau03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:nau00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03083 Polycomb repressive complex
    109214000
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:nau04121]
    109214000
   03036 Chromosome and associated proteins [BR:nau03036]
    109214000
Enzymes [BR:nau01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     109214000
Ubiquitin system [BR:nau04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    109214000
Chromosome and associated proteins [BR:nau03036]
 Eukaryotic type
  Histone modification proteins
   Polycomb repressive complex (PRC) and associated proteins
    Canonical PRC1 (PRC1.2/1.4)
     109214000
    Noncanonical PRC1 (PRC1.1)
     109214000
    Noncanonical PRC1 (PRC1.3/1.5)
     109214000
    Noncanonical PRC1 (PRC1.6)
     109214000
SSDB
Motif
Pfam: zf-C3HC4_2 zf-C3HC4 zf-RING_2 zf-RING_UBOX zf-RING_5 zf-C3HC4_3 zf-C3HC4_4 zf-RING_4 zf-rbx1 DUF4695 zf-UDP zf-Nse RAWUL zf-C3HC4_5 ZNF512_C2HC zf-RING_11 zf-RING_6
Other DBs
NCBI-GeneID: 109214000
NCBI-ProteinID: XP_019233398
LinkDB
Position
Unknown
AA seq 449 aa
MPAQKRSYDTPPTPPPLPDEKNDDSLQGNQNHDEEAYDTDDSDGTTCSSGGEKDEFITVR
LSEIRKEVQCPICLGIIRKTRTVMECLHRFCRECIDKSMRMGNNECPACRTHCASRRSLR
DDPNYDALISLLYPDIDKYEEEELAFHEEEKARNKQIQASIAQTLRRQSEALGRKRTARA
TAAAFARRSQGRYRSLRGRRNFQGAEHQISDEEEDGNHDIGKDSSSADERSIEVKPKRYK
KRGGRPSQASAASDENDAEINQESLGACSGLIRCSEILAWGKGGMRSNTRHGGLGGGTGK
FSRNSRVSKLIDRLSCSDENEGKLDVRLKLVPMSEEDIPCLQRPYLCCRPTMEVKHLSQY
VAQQTSIEVGKIDIVLIKELNPSDNSSSSDIMAIPKLVGDPCIEIHTVNEHQTLGEIQEM
CGFNQRNLILAYGCKSKNRTDHDEGKVTV
NT seq 1350 nt   +upstreamnt  +downstreamnt
atgcctgctcaaaagcgttcgtacgacactcctcctactcctcctccgctaccggacgaa
aaaaacgatgattcgttacaaggtaatcaaaatcacgacgaagaagcctacgacaccgac
gattcggatggaactacttgttcgagcggcggcgagaaagatgagtttatcactgtgaga
ctttcagaaattcgcaaagaagtacagtgccctatatgtttaggcattattcgaaagacc
agaacagttatggaatgcttgcatcgcttttgtagagaatgcattgacaaatctatgcga
atggggaacaatgagtgtcctgcttgtcgtacccactgtgctagtcgccgttctctgaga
gatgatccaaactatgatgctctaatttcccttctatatccagatattgataaatatgaa
gaggaggaattggcttttcatgaagaggagaaagctcggaataagcagatacaagcttca
attgcacagacattacggcgacaatcagaagcactgggaaggaaacggaccgctagagct
acagcagcagcttttgcgaggagatctcagggacgctatcgaagtttaaggggaagaaga
aattttcagggtgctgaacaccagatatctgatgaggaggaagatggtaatcatgatatt
ggcaaagattcttcctctgctgatgagcgctcgatagaagtcaaaccaaaacggtacaaa
aagaggggaggacggccttctcaggcttcagcagctagtgacgaaaatgatgcagaaata
aaccaagaatcacttggcgcatgtagtggacttattcgctgttcagagattcttgcctgg
ggaaaaggtggcatgcgaagtaacacgagacatgggggtcttgggggaggcactggcaaa
ttttccaggaatagccgagtctcaaagctaattgatcgtctttcttgttcagatgaaaat
gaagggaagttggatgtcagactgaaacttgttcccatgtctgaagaagatataccatgt
ttgcaacgaccttacctttgctgccggcccactatggaagttaaacatttgagccaatat
gtagcacagcaaacgtccatagaagtcggcaaaattgacatagtgctgataaaagagctt
aaccctagtgacaactcttcaagttctgatatcatggctattcccaaactcgttggagat
ccttgtattgaaatccatacggtaaacgagcatcagacattaggggaaatccaagagatg
tgtggttttaaccagcgtaatctgatcttagcatacggatgcaagtcaaagaataggaca
gaccatgatgaagggaaggtgaccgtgtaa

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