Nicotiana attenuata (coyote tobacco): 109214915
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Entry
109214915 CDS
T05870
Name
(RefSeq) pre-mRNA-processing-splicing factor 8A-like
KO
K12856
pre-mRNA-processing factor 8
Organism
nau
Nicotiana attenuata (coyote tobacco)
Pathway
nau03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
nau00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109214915
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
nau03041
]
109214915
Spliceosome [BR:
nau03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
109214915
Complex C
U5 SnRNP specific factors
109214915
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
PROCT
RRM_4
JAB
Motif
Other DBs
NCBI-GeneID:
109214915
NCBI-ProteinID:
XP_019234426
UniProt:
A0A1J6KDF7
LinkDB
All DBs
Position
Unknown
AA seq
2395 aa
AA seq
DB search
MWSGNGQDMWNNSNMAPPGTSGSAGGPPPPSMMQPPPPGGGPPPPSMMPPPPGTSSGPVM
MPPGTSGSSGGPAPPLPPPSYTVLPTEAQLEEKARKWMQLNSKRYSDKRKFGFVETQKED
MPPEHVRKIIRDHGDMSSKKYRHDKRVYLGALKFVPHAVYKLLENMPMPWEQVRDVKILY
HITGAITFVNEIPWVVEPIYLAQWGTMWIMMRREKRDRRHFKRMRFPPFDDEEPPLDYAD
NLLDVDPLEPIQLEMDEEEDSAVYNWFYDHKPLVKTKLINGPSYRRWHLSLPIMATLHRL
AGQLLSDLTDRNYFYLFDMESFFTAKALNMCIPGGPKFEPLYRDMEKGDEDWNEFNDINK
LIIRSPLRTEYRIAFPHLYNNRPRKVKLCIYHTPMIMYIKTEDPDLPAFYYDPLIHPIVT
KDRREKKVPEDDDDDDFALPEGVEPLLNETPIYTDTTAAGISLLFAPRPFNMRSGRTRRA
EDIPLVSDWFKEHCPPSYPVKVRVSYQKLLKCFVLNELHHRPPKAQKKKHLFRSLQATKF
FQTTELDWAEAGLQVCKQGYNMLNLLIHRKNLNYLHLDYNFNLKPVKTLTTKERKKSRFG
NAFHLCREILRLTKLVVDANVQFRLGNVDAFQLADGLQYIFSHVGQLTGMYRYKYRLMRQ
IRMCKDLKHLIYYRFNTGPVGKGPGCGFWAPMWRVWLFFLRGIVPLLERWLGNLLARQFE
GRHSKGVAKTVTKQRVESHFDLELRAAVMHDVLDAMPEGIKQNKARTILQHLSEAWRCWK
ANIPWKVPGLPVPIENMILRYVKSKADWWTNVAHYNRERIRRGATVDKTVCRKNLGRLTR
LWLKAEQERQHNYLKDGPYVTPEEAVAIYTTTVHWLESRKFSPIPFPPLSYKHDTKLLIL
ALERLKESYSVAVRLNQQQREELGLIEQAYDNPHEALSRIKRHLLTQRAFKEVGIEFMDL
YSYLIPVYEIEPLEKITDAYLDQYLWYEGDKRHLFPNWIKPADSEPPPLLVYKWCQGINN
LQGVWDTSEGQCVVMLQTKFEKFFEKIDLTMLNRLLRLVLDHNIADYVTAKNNVVLSYKD
MSHTNSYGLIRGLQFASFVVQYYGLVLDLLLLGLTRASEIAGPPQMPNEFITFSDTRVET
RHPIRLYSRYIDKVHILFRFTHEEARDLIQRYLTEHPDPNNENMVGYNNKKCWPRDARMR
LMKHDVNLGRSVFWDMKNRLPRSITTLEWENSFVSVYSKDNPNLLFSMCGFEVRILPKIR
MTQEAFSNTRDGVWNLQNEQTKERTAVAFLRVDDEHMKVFENRVRQILMSSGSTTFTKIV
NKWNTALIGLMTYFREATVHTQELLDLLVKCENKIQTRIKIGLNSKMPSRFPPVIFYTPK
EIGGLGMLSMGHILIPQSDLRYSQQTDVGVTHFRSGMSHEEDQLIPNLYRYIQPWESEFI
DSQRVWAEYALKRQEAQAQNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWRVRT
DFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDVIQALGGVEGILEHTLFKGTYFPTWEG
LFWEKASGFEESMKYKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGI
FMHGKIPTLKISLIQIFRAHLWQKIHESVVMDLCQVLDQELDALEIETVQKETIHPRKSY
KMNSSCADILLFAAHRWPMSKPSLVAESKDVFDQKASNKYWIDVQLRWGDYDSHDIERYT
RAKFMDYTTDNMSIYPSPTGVMIGLDLAYNLHSAFGNWFPGSKPLLAQAMNKIMKSNPAL
YVLRERIRKGLQLYSSEPTEPYLSSQNYGEIFSNQIIWFVDDTNVYRVTIHKTFEGNLTT
KPINGAIFIFNPRTGQLFLKVIHTSVWAGQKRLGQLAKWKTAEEVAALVRSLPVEEQPKQ
IIVTRKGMLDPLEVHLLDFPNIVIKGSELQLPFQACLKIEKFGDLILKATEPQMVLFNIY
DDWLKSISSYTAFSRLILILRALHVNNEKAKMLLKPDKSVVTEPHHIWPSLTDDQWMKVE
VALRDLILSDYAKKNNVNTSALTQSEIRDIILGAEITPPSQQRQQIAEIEKQAKEASQLT
AVTTKTTNVHGDELIVTTTSPYEQAAFGSKTDWRVRAISATNLYLRVNHIYVNSEDIKET
GYTYIMPKNILKKFICIADLRTQIAGYLYGVSPPDNPQVKEIRCIAMPPQWGTHQQVHLP
SGLPEHDFLNDLEPLGWMHTQPNELPQLSPQDVTSHARILENNKHWDGEKCIILTCSFTP
GSCSLTAYKLTPTGYEWGRANKDTGSNPHGYLPTHYEKVQMLLSDRFLGFYMVPDNGPWN
YNFMGVKHTVSMKYGVKLGTPREYYNEDHRPTHFLEFSNMEEGDTAEADREDTFT
NT seq
7188 nt
NT seq
+upstream
nt +downstream
nt
atgtggagtggaaacggacaagatatgtggaacaatagtaacatggcaccaccaggtact
agcggtagtgctggaggaccgccgcctccgtcaatgatgcaaccgcctccgcctggtgga
ggaccgcctccgccgtctatgatgccgccacctccaggtacaagctcaggaccagtaatg
atgcctcctggtacaagcggtagtagtggaggaccggctccgcctctgccaccgccttct
tatactgttttgccaactgaggctcagcttgaagagaaagctaggaaatggatgcagctt
aactctaagcggtatagtgataagcgcaaatttggatttgtggagacgcaaaaggaggat
atgcctccggagcatgttcgcaagattattagggaccatggggatatgtcatcaaaaaaa
tatcgtcatgataaacgtgtgtatctcggagctcttaaatttgttcctcatgctgtttac
aaactccttgagaacatgcctatgccgtgggagcaggttcgagatgtgaaaatactgtac
cacattactggtgctattacatttgttaatgagataccatgggttgttgaacctatatat
ctggctcagtggggcactatgtggatcatgatgagaagggagaagagagaccggcggcat
ttcaagagaatgcgttttcctccttttgacgatgaggagcctccattagattatgctgat
aatcttttggatgttgatcctttggagccaatccagttggagatggatgaagaagaagat
tcagctgtttataactggttttatgaccataagccattggtgaaaacaaagcttattaac
ggtcctagttaccgcaggtggcatttgtccctccctataatggctacactgcaccggctg
gctggacagctgctttcggatctgactgatcgcaattacttctacttgtttgatatggag
tcgtttttcactgctaaagcattgaatatgtgcatacctggtgggcccaagttcgaacct
ttatatcgtgacatggagaaaggagatgaagactggaatgagtttaatgatatcaacaaa
ttgatcatcaggtcaccgctgaggacagaatacagaattgccttccctcacctctataac
aacagaccaagaaaggtgaagctttgtatatatcacactccgatgatcatgtacataaaa
acagaggatccagatctacctgctttctattatgatccgcttatacatcccatagtcacc
aaggaccgccgagagaagaaagttcctgaggatgacgatgatgatgactttgccttgcct
gagggtgttgagccattgctgaacgagactccaatctatactgatactactgctgctggt
atttccctcttgtttgccccacgcccatttaacatgagatctggtcggacaagacgtgct
gaagatataccccttgtgtcagattggtttaaggagcattgtcctccatcatatcctgtc
aaggtgcgtgtcagttatcagaagttattgaaatgttttgtgttgaatgaactgcatcat
agacctcccaaggcccagaagaagaagcacctcttccgctcacttcaggccacaaaattt
ttccaaaccacagaacttgattgggctgaagctggtctccaagtttgcaagcagggatac
aatatgctgaatctcttgatccataggaaaaacctgaattatcttcaccttgattacaat
tttaatttgaagcctgttaagacactaactacaaaggaacgtaagaaatcccggtttggt
aatgctttccacctttgtcgtgaaattctgcgtttgacaaaactagttgttgatgccaat
gttcagttccgtctgggaaatgttgatgcatttcagctggcagatggattgcaatacatt
ttttcacatgttggtcagttgacgggtatgtaccgttataagtacaggcttatgaggcag
attcgaatgtgtaaggatttgaaacatttgatctattatcgattcaatactgggccagtt
ggaaaaggtcctggttgtggtttctgggcacctatgtggagggtgtggttattcttcctt
cggggtatagtgcctcttttggaacgatggttgggaaatttattggcgaggcaatttgag
ggtcgccattcgaagggggtggccaaaactgtcacaaagcaacgtgttgaaagccacttt
gacttggagctccgtgctgcagtaatgcacgatgtccttgatgctatgccagagggtatc
aagcaaaataaagcgagaaccattttgcagcatctaagtgaagcatggcgttgttggaag
gcaaatattccttggaaggtcccaggtttgcctgttcctattgagaacatgattcttcgt
tatgtcaaatcaaaagctgattggtggacaaatgttgctcactacaaccgtgaacgtata
agaagaggagcaactgttgacaagactgtgtgtcgtaaaaaccttggaagattgactcgc
ctttggctgaaggctgagcaggagcggcaacataactacttgaaagacggcccgtatgtt
actccagaagaagcagtagctatttatactaccactgtgcattggttggagtcaaggaag
ttttctcctatcccattccctccattgtcatacaagcatgacacaaagctacttatcctt
gcccttgagagactgaaagaatcttacagtgtggctgtgaggttaaaccagcagcaaagg
gaagagttgggcctcattgagcaagcttatgataatccgcatgaggcattgtcaaggatt
aagcgtcacctgcttactcagcgtgccttcaaagaagtcggcatcgagttcatggacttg
tacagttacctgattcctgtttatgagatcgaaccacttgagaagattactgatgcgtac
ctggatcagtacctatggtatgaaggtgataagcgccatctcttcccaaattggattaag
cctgccgattcagagccaccaccactattagtgtataaatggtgtcaaggcataaacaat
ttgcaaggagtatgggacaccagtgaaggacagtgtgtggtgatgctgcagacgaagttt
gagaaattctttgaaaagattgacctgaccatgttgaacaggcttctgcgtttggtgctg
gaccacaatattgctgattatgttactgcaaaaaacaacgttgtgctgtcttacaaagat
atgagtcacacaaattcatacgggctgatacgtggtcttcaatttgcttcatttgttgtg
cagtactatgggcttgtgttggatcttttgctcctaggtttaactcgagctagtgaaatt
gctggtccaccacagatgcctaatgaattcataacctttagtgatactagagtggaaacg
aggcatcctatccggttgtactctcgctacattgacaaggtgcatatattatttcgcttc
actcatgaagaggctcgggaccttatccaaagatatcttactgaacatcctgatcccaac
aatgaaaacatggttggttataacaacaagaaatgctggccaagggacgcaagaatgagg
ctcatgaagcatgatgttaatcttgggagaagtgtcttctgggacatgaagaatcggctg
cctagaagtattactacattggagtgggaaaacagctttgtctctgtttatagcaaagat
aacccaaacttgctcttcagcatgtgtggatttgaagttcggatactgcctaagataaga
atgacccaagaggcattcagcaatacaagagatggagtctggaatctacaaaatgagcag
actaaggaacgcacagctgttgccttcttgcgtgtagatgacgagcacatgaaggtgttt
gagaatcgtgttaggcagatcctcatgtcctctggttctacaacattcacaaagattgtt
aacaaatggaacactgctcttattggcctcatgacatatttccgtgaagcaacagtacat
acccaagaattactggacctgctggtcaaatgtgaaaacaagatacaaactcgtattaag
attggtttgaactctaaaatgcccagtaggtttcctcctgttattttctacacgccaaag
gaaattggagggctgggaatgttgtcaatgggtcatatattgatcccgcagagtgatctt
aggtatagtcagcaaacagatgttggtgtgacacatttcagaagtggaatgagccatgaa
gaggaccaattgattccaaatctttatcgatacatacagccgtgggagagtgagttcatt
gactctcagagagtttgggccgagtatgctttgaaaaggcaggaagcccaggcacagaat
aggcgtttgactcttgaagatctggaagattcatgggatcgtggaattcctcgaatcaat
acattgttccagaaggatcgccacacccttgcatatgacaaaggatggagagtgagaaca
gactttaaacagtaccaagttcttaagcagaatccattctggtggacacaccagaggcat
gatggaaagctatggaacctgaataactatcgtactgatgtgatacaagctcttggagga
gttgaaggaattcttgagcacacattattcaaaggaacatatttccctacttgggagggt
cttttctgggagaaagcttcaggttttgaggaatccatgaagtacaagaaattgactaat
gctcaacgatctgggcttaatcaaatccctaatcgtaggtttactctttggtggtcgcca
acaataaatagggccaatgtctatgttggtttccaagtacagctggacctgaccgggata
tttatgcacgggaagattccaactctgaagatatctttgatccagatcttccgtgcacat
ttgtggcagaagatccatgagagtgttgtcatggatctttgccaagttttggatcaagag
ttggatgcattggaaattgagactgtgcagaaggaaacaattcatccaagaaagagttac
aagatgaatagctcgtgcgctgacatcctcctctttgctgcacatagatggccaatgtca
aaacctagtcttgttgccgaatcgaaggatgtgtttgaccagaaagctagtaacaaatac
tggatagatgtgcagcttcgatggggtgactatgattctcatgatatcgagcgttataca
cgtgcaaagttcatggattacacaacagacaacatgtctatttatccatctcctactggt
gtaatgattggacttgaccttgcttacaacttgcattctgcctttggtaactggttccct
ggttcaaaaccattgcttgcccaagccatgaacaagattatgaagtcaaaccctgcactc
tatgttctgagggaacgcataaggaaagggttgcaattgtattcttcagagcccacagaa
ccatatttatcatctcagaattatggagagattttcagcaatcaaattatatggtttgtt
gatgacacaaacgtgtaccgagtgaccatccacaagaccttcgagggaaatctgacgaca
aagcccataaatggtgcaattttcatcttcaatcctaggacaggtcaactgtttttgaag
gtcattcacacaagtgtgtgggcagggcaaaagcgtcttggccagctggctaagtggaaa
acagccgaagaagtggctgcgcttgtaaggtctttgccagttgaagaacaaccgaagcaa
attattgtgactcggaaagggatgcttgatccattggaggtccacttgctcgattttccg
aatattgtgatcaaaggaagtgagctgcagttaccattccaggcctgtttgaagatagag
aaatttggtgatcttatactgaaggctacggagccacaaatggttctgttcaacatatat
gatgattggttgaagagcatctcatcctatacagcattctccaggctcatcctcatcctg
cgtgcactccatgtgaacaatgaaaaggctaagatgctactcaagcctgacaagtcggtt
gttactgagcctcaccacatctggccttcacttacagatgaccagtggatgaaggttgag
gtagcgcttagagatctcattctctcagactatgcaaaaaagaacaatgtcaacacatca
gcattgacgcagtctgagatccgtgatattatacttggagctgagattactcctccatcc
cagcagcgccaacagatagctgagattgagaaacaggccaaggaagcaagtcaactgaca
gcggttaccacaaagaccactaatgtccatggtgatgagttgattgttactactacaagt
ccctacgagcaagctgcctttggctctaaaacagattggcgtgtgagagcaatttctgca
acaaatctctatctccgtgtgaaccacatatatgtcaattcagaggacataaaggagact
ggatatacgtacatcatgccaaagaatattctgaagaagttcatttgcattgccgatctg
cggacacaaattgctggttacttatatggtgtaagtccaccagataatcctcaggtgaag
gaaatccggtgtattgcaatgcctccacagtgggggacacatcagcaggtgcatctacct
tccggtcttccggagcatgattttctcaatgacttggagcctttgggatggatgcacaca
caaccaaatgaacttcctcagctgtctccacaggatgttacttcacatgctcggatcctt
gagaacaacaaacactgggatggagagaagtgtattatattgacatgcagcttcacacca
gggtcttgttcgttaactgcatataagttgacaccaactgggtatgaatggggacgtgct
aacaaagatacaggtagcaaccctcatggttacctgccgactcattacgagaaggtccag
atgctgttgagtgaccgattccttggcttttacatggtacctgataatggtccatggaat
tacaacttcatgggagtgaagcacactgttagcatgaagtacggggtgaagttaggtaca
cctcgggagtactacaatgaggatcatcgtcctacacacttcctggaattcagcaatatg
gaggaaggtgacactgctgaggcagatcgggaagatacatttacataa
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integrated database retrieval system
