Nicotiana attenuata (coyote tobacco): 109215596
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Entry
109215596 CDS
T05870
Name
(RefSeq) zinc finger CCCH domain-containing protein 49-like
KO
K12872
pre-mRNA-splicing factor RBM22/SLT11
Organism
nau
Nicotiana attenuata (coyote tobacco)
Pathway
nau03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
nau00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109215596
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
nau03041
]
109215596
Spliceosome [BR:
nau03041
]
Complex B
Other components
Prp19-related factors
109215596
Complex C
109215596
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
STL11_N
RRM_1
zf-CCCH_RBM22
Torus
zf_CCCH_4
zf-CCCH_2
zf-CCCH_10
RRM_occluded
RRM_YTH1
zf-CCCH_3
zf-CCCH
zf-CCCH_4
RRM_3
Nup35_RRM_2
zf-CCCH_PARP12
Motif
Other DBs
NCBI-GeneID:
109215596
NCBI-ProteinID:
XP_019235244
UniProt:
A0A1J6JJ83
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Position
2:complement(95899558..95906093)
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AA seq
478 aa
AA seq
DB search
MAHRLLRDAEADGWERSDFPIICESCLGDSPYVRMTKADYDKECKICTRPFTVFRWRPGR
DARYKKSEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSINSNDAIPKSDVNREYFAE
EHDRRARAGIDYESSYGKARPNDTILKLQRTTPYYKRNRAHVCSFFIRGQCTRGLECPYR
HEMPETGELSQQNIKDRYYGVNDPVAMKLLNKAGEMPSLEPPDDESIRTLYVGGVDARIS
EQDLRDHFYAHGEIESIKMVLQRGCAFVTYTTREGAEKAAEELANRLVIKGLRLKLLWGR
PQAPKPETELSDEARQQAAVSHSGLLPRAVISQQQNQLPPPPGTQEQPPPMPYFNIPPMP
QQERAYYPSMDPQRMGAVVPSQEGASSSATGSGPENKSGSEKQPQVQQHYAYPPAPPPQG
QFYPPYYPPYGYMPPPPPQHYQQYPPPYQAARPPPPPAGEQAAYQQKPQPAVPAAQQP
NT seq
1437 nt
NT seq
+upstream
nt +downstream
nt
atggcgcataggttgctgagggatgcagaagcagatggatgggaacgatctgattttccg
attatttgtgagtcttgtcttggagatagtccttacgtacgaatgacaaaagcagattat
gacaaggagtgcaagatatgcacacggcccttcacagtgttcagatggaggcctggtcgg
gatgcaagatacaaaaaatctgagatctgtcagacctgcagcaaattgaagaatgtttgt
caagtttgtcttttggatcttgagtatggtttgccagttcaggtccgagacactgctctc
agtatcaattcgaatgatgcaattcccaagagtgacgttaatagagaatattttgcggag
gagcatgaccgcagggcgagagcagggattgattacgaatcttcatatgggaaagctcgt
cctaatgacactattttgaagctccaaagaacaactccatactacaagaggaatcgggcg
catgtttgtagtttctttatacgtggtcaatgtacaagaggtttggagtgcccttatagg
catgaaatgcccgagactggggagttgtcacagcaaaacattaaggaccgttattacgga
gttaatgatcccgtggctatgaagctacttaataaggcaggtgaaatgccttcattggag
cccccagatgatgagagcattagaaccctctatgtgggtggtgttgatgcaagaatcagc
gagcaggatctaagggaccacttttatgcacatggagaaatcgagtctattaaaatggtg
ttgcagcgtggttgtgcttttgtaacctacacgacaagagaaggtgcagagaaggcggct
gaggaactagcgaacaggctagtgataaagggcttgagactgaagcttctctgggggaga
ccacaagctcctaaaccagagaccgagctgtctgatgaagcaagacagcaggctgcagtg
tcacacagtggattgttgcccagagctgtcatatcacaacagcagaaccagcttcctcca
cccccaggcacacaggaacaacccccacccatgccatacttcaacattccgccaatgcct
cagcaagaaagagcatattatccgtcaatggatcctcagaggatgggtgccgtagttcca
tctcaggagggggcttctagttcagctacagggtcaggtcctgaaaacaagagtggttct
gagaaacaaccacaagtacagcagcattacgcgtatccaccggcgcccccacctcaaggt
caattttacccgccttattatccaccctatggctatatgcctccaccaccgcctcaacat
tatcagcagtatcccccgccttatcaagctgccagacctccaccacctcctgctggtgag
caagcagcttatcagcagaagcctcaaccagcagtaccggcagcacagcaaccttga
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