Nicotiana attenuata (coyote tobacco): 109215864
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Entry
109215864 CDS
T05870
Name
(RefSeq) eukaryotic initiation factor 4A-3-like
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
nau
Nicotiana attenuata (coyote tobacco)
Pathway
nau03013
Nucleocytoplasmic transport
nau03015
mRNA surveillance pathway
nau03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
nau00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109215864
09122 Translation
03013 Nucleocytoplasmic transport
109215864
03015 mRNA surveillance pathway
109215864
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nau03019
]
109215864
03041 Spliceosome [BR:
nau03041
]
109215864
03009 Ribosome biogenesis [BR:
nau03009
]
109215864
03012 Translation factors [BR:
nau03012
]
109215864
Enzymes [BR:
nau01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
109215864
Messenger RNA biogenesis [BR:
nau03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
109215864
mRNA cycle factors
Stress granule specific factors
109215864
Spliceosome [BR:
nau03041
]
Complex C
Other components
EJC/TREX
109215864
Ribosome biogenesis [BR:
nau03009
]
Eukaryotic type
90S particles
Helicases
109215864
Translation factors [BR:
nau03012
]
Eukaryotic type
Initiation factors
eIF-4
109215864
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
Motif
Other DBs
NCBI-GeneID:
109215864
NCBI-ProteinID:
XP_019235527
LinkDB
All DBs
Position
2:4233968..4241348
Genome browser
AA seq
363 aa
AA seq
DB search
MDGAATGSVIPANRRRPPMEEDRLVFETSKGVEPIASSAEMGIKDDLLRGRHCSGPIRCR
KNLHDCTHRLPNCGYQIFRAHACIGGKSVGEDIRKLEQVVSGRVCDIIKRRTLRTRGIKL
LILDESDEMLSRGFKDQIYDVYRYLPPELQVVLISATLPNEILEITSKFMTDPVRILVKH
DELTLEGIKQFFVAVEKEEWKFDTLCDLYDTLTITQAVTFCNTKRKVDWLTSKMRENNFT
VSSMHGDMPQKERDAIMAEFRGGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIH
CIGRSGRFGRKCPLELKQSALTTASTELKEDISLDVFVLRTKTTKASYSKLSLAVPFAEG
SLI
NT seq
1092 nt
NT seq
+upstream
nt +downstream
nt
atggatggggcggcgactggctctgttattccggcgaacaggaggcggccgccaatggag
gaagacagattggtcttcgagacatcaaagggcgtggaacccatcgctagttccgctgag
atgggaattaaagatgaccttcttagaggacgtcattgctcaggcccaatccggtgccgg
aaaaacctccatgattgcactcaccgtttgccaaattgtggataccaaatcttccgagca
catgcatgtattggaggcaaaagcgtaggtgaagatatcagaaaactagagcaagtagtc
tctggaagagtctgtgacatcattaaaaggagaactttacgaactaggggtataaaatta
ttgattcttgacgaatctgatgagatgttgagccgtggttttaaggatcagatatatgat
gtttacagatatcttccaccggagcttcaggttgtactgatttctgccactcttccaaat
gaaattctggagataacaagcaaatttatgacagatcctgttcggattcttgtaaaacat
gatgagttgactctagagggcatcaaacagttctttgtcgcggttgagaaagaagagtgg
aaatttgatacactttgtgatctttatgatacactcaccatcacccaggctgttactttc
tgcaacacaaaacgaaaggttgattggctgactagcaagatgcgtgaaaataattttaca
gtctcatctatgcatggagatatgccacagaaggagagagatgctattatggcagagttc
cgaggtggcacgactcgtgttctaatcaccacagatgtttgggcaaggggattggatgtt
caacaggtgtctctggtgattaattatgaccttccaaacaatagagagctgtacattcat
tgcattggtcgctctggtcgttttggtcgaaagtgccccttagaacttaaacagagcgct
ctgacaactgcttccacagagctaaaagaggacatctccttagatgtttttgttttacgg
accaagaccacaaaggcctcatactcgaagctatctcttgcagtgccctttgctgaagga
agtttaatctaa
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