Nicotiana attenuata (coyote tobacco): 109216358
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Entry
109216358 CDS
T05870
Name
(RefSeq) E3 ubiquitin-protein ligase COP1-like isoform X1
KO
K10143
E3 ubiquitin-protein ligase RFWD2 [EC:
2.3.2.27
]
Organism
nau
Nicotiana attenuata (coyote tobacco)
Pathway
nau04120
Ubiquitin mediated proteolysis
nau04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
nau00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
109216358
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
109216358
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
nau04121
]
109216358
Enzymes [BR:
nau01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
109216358
Ubiquitin system [BR:
nau04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
109216358
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
109216358
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_CDC20-Fz
Beta-prop_EML_2
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_TEP1_2nd
Beta-prop_RIG_2nd
WDR55
Beta-prop_EIPR1
Beta-prop_DCAF4
WD40_MABP1-WDR62_2nd
Beta-prop_WDR19_1st
EIF3I
zf-C3HC4_2
WD40_MABP1-WDR62_1st
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_C
Beta-prop_HPS5
Beta-prop_CAF1B_HIR1
zf-C3HC4
Beta-prop_EML
Beta-prop_WDR75_1st
WD40_like
WD40_RFWD3
zf-C3HC4_3
zf-RING_2
Beta-prop_IFT140_1st
Beta-prop_DCAF12
zf-C3HC4_4
Beta-prop_WDR35_TULP_N
Beta-prop_SCAP
zf-RING_UBOX
zf-RING_5
U-box
Beta-prop_IFT122_2nd
Beta-prop_IFT122_1st
DUF1664
FapA
Motif
Other DBs
NCBI-GeneID:
109216358
NCBI-ProteinID:
XP_019236049
LinkDB
All DBs
Position
Unknown
AA seq
688 aa
AA seq
DB search
MGGGGERLIGALVPTVKSEPENAGETSAPAAVTVEVQEQIPALEKEDEVDKDMLCPICMQ
IIKDAFLTACGHSFCYMCIVTHLHNKSDCPCCSHYLTTNHLYPNFLLNKLLMKRSARQMA
KSATPMEQLRQAIQQDSHLILRQGCDVSIKELESLLSLLMEKKRKMEQEEAETNLQILLE
FLQCLRKQKVEELNEIQNDLKYIKEDINAVEKRRIELYRARSRYSAKMRMLVDDSSAMTV
RPSLGDKEGGAIVSSSVGSQEQVRAGTTQTRNTDTRAPGISQLVQWKDDHGGSDSQHPNQ
PGQAIARKKRVHAQFNELQTCYLQKRRYWARQSEKEEERVANVMNREGYSAGLEDFRSVL
STFTRYSRLRVVAELRHSDLFHSANIVSSIEFDRDDELFATAGVSRRIKVFEFASVVNEP
ADAQCPIVEMSTRSKLSCLSWNKCTKNQLASSDYEGIVTVWDVTTRQSVMEYEEHEKRAW
SVDFCHTEPSLLVSGSDDCKVKVWCTKQEASVLTIDMKANICSVKYNPGSSVHVAVGSAD
HHIHYYDLRNVSQPLHILSGHRKAVSYVKFLSNNELASASTDSTLRLWDVKENVPLRTFK
GHANEKNFVGLSVNSEYLACGSETNEVFVYHKEISKPAAWHNFGSDDHNDPDGDMGSYFI
SAVCWKRDSPTLLTANSQGTIKVLVLAA
NT seq
2067 nt
NT seq
+upstream
nt +downstream
nt
atgggaggaggaggagagcgtttaatcggagctttagttccgacggttaaatcggagccg
gagaatgccggtgaaacttcagcaccggcggcggtgacggtggaggttcaggagcaaatt
ccggcgttggagaaggaagacgaagtggataaggatatgttatgtccgatatgtatgcaa
attataaaggatgcttttctgacggcgtgtggacatagcttttgttacatgtgcattgtt
actcatcttcacaataaaagtgattgtccttgttgttcgcattacttgactactaatcac
ctttaccctaattttctactcaataagttattgatgaagagatctgctcgccaaatggcc
aaaagtgcaacacctatggaacaacttcgccaagcaatacagcaggattctcatctgatt
cttaggcagggatgcgatgtgtccatcaaagagctggagagtctattatcactacttatg
gaaaagaaaagaaaaatggaacaagaagaagctgaaacaaatcttcagattctgcttgag
tttctccagtgtttaaggaagcaaaaagttgaagagcttaatgagatccaaaatgatctc
aagtacattaaagaagacataaatgctgtggagaagcgtagaatagagttatatagggca
aggagcagatattcagcgaaaatgagaatgctagtagatgattcttcggcaatgacagtc
aggccttcattgggagataaggaaggtggtgcaattgtttctagttctgtcggttcacaa
gaacaagttcgtgctggtactacacagaccaggaacactgatacaagagctcctggaata
tctcaacttgttcaatggaaggatgaccacggtggatcagattcacagcatcctaatcaa
cctggacaggcaatagcaaggaaaaaacgcgttcacgcacagttcaatgagcttcaaacc
tgttacctgcaaaagaggcgctattgggcaagacagtcagagaaagaggaagaaagggta
gcaaatgtcatgaatagagaaggttattctgcgggacttgaagattttcgatctgttctg
tctacctttacgcgatacagtcgtttgagggttgttgctgaacttagacattctgacctt
ttccactcagccaatatcgtttcaagtattgaatttgaccgagatgatgaattgtttgct
actgctggggtgtcacgaagaattaaggtctttgagtttgcatcggtggtgaacgaacca
gcagatgcgcaatgtcctattgttgaaatgtctacacgatccaaattaagttgtttgagc
tggaacaagtgcactaaaaaccagttagcaagcagtgactatgagggcatagtgacggtt
tgggatgttacaactcgtcagagtgtgatggagtatgaggagcatgaaaaacgagcatgg
agtgttgacttttgccatactgaaccttctctgcttgtgtccggtagtgatgattgcaag
gtcaaagtttggtgcacgaagcaggaagccagcgttcttacaattgacatgaaagctaac
atttgctcagtgaagtataatcctggatccagtgttcatgtagctgtgggttctgcagat
catcacattcactattatgacttgagaaatgttagccagccactgcatattttgagtggg
caccgtaaagctgtttcttatgtaaagtttttatccaacaatgagctagcttctgcatca
actgatagtacattgcgtttgtgggatgtcaaggagaatgttccactgcgtacttttaaa
ggacatgcaaatgagaagaactttgtgggtctttcagtaaacagtgaataccttgcatgt
ggcagtgagacaaatgaagtgtttgtatatcacaaggaaatttctaagccagcagcttgg
cacaactttggttctgatgatcataatgatccagatggggacatgggatcatatttcatc
agtgctgtttgttggaaacgtgacagcccaacacttctaacggcaaacagtcaagggaca
ataaaagtacttgtccttgctgcttga
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