KEGG   Nicotiana attenuata (coyote tobacco): 109216358
Entry
109216358         CDS       T05870                                 
Name
(RefSeq) E3 ubiquitin-protein ligase COP1-like isoform X1
  KO
K10143  E3 ubiquitin-protein ligase RFWD2 [EC:2.3.2.27]
Organism
nau  Nicotiana attenuata (coyote tobacco)
Pathway
nau04120  Ubiquitin mediated proteolysis
nau04712  Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:nau00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    109216358
 09150 Organismal Systems
  09159 Environmental adaptation
   04712 Circadian rhythm - plant
    109216358
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:nau04121]
    109216358
Enzymes [BR:nau01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     109216358
Ubiquitin system [BR:nau04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    109216358
  Multi subunit type E3
   Cul4 complex
    Target recognizing subunit (DCAF)
     109216358
SSDB
Motif
Pfam: Beta-prop_THOC3 Beta-prop_WDR5 Beta-prop_WDR3_1st WD40 WD40_CDC20-Fz Beta-prop_IFT122_1st Beta-prop_EML_2 WD40_Prp19 WD40_WDHD1_1st WDR55 Beta-prop_TEP1_2nd WD40_Gbeta Beta-prop_RIG_2nd Beta-prop_WDR36-Utp21_1st Beta-prop_WDR3_2nd Beta-prop_WDR36-Utp21_2nd Beta-prop_EIPR1 Beta-prop_DCAF4 WD40_MABP1-WDR62_2nd Beta-prop_WDR19_1st DSE1_N EIF3I zf-C3HC4_2 WD40_MABP1-WDR62_1st ASA1 Beta-prop_TEP1_C Beta-prop_HPS5 Beta-prop_CAF1B_HIR1 Beta-prop_NOL10_N Beta-prop_WDR90_POC16_2nd Beta-prop_EML zf-C3HC4 Beta-prop_WDR75_1st Beta-prop_Aladin WD40_RFWD3 WD40_like zf-C3HC4_3 Beta-prop_WDR41 PAC11 CFAP251_N zf-RING_2 Beta-prop_IFT140_1st Beta-prop_DCAF12 zf-C3HC4_4 Beta-prop_WDR35_TULP_N Beta-prop_SCAP zf-RING_UBOX zf-RING_5 U-box Beta-prop_IFT122_2nd DUF1664 PML_C
Other DBs
NCBI-GeneID: 109216358
NCBI-ProteinID: XP_019236049
LinkDB
Position
Unknown
AA seq 688 aa
MGGGGERLIGALVPTVKSEPENAGETSAPAAVTVEVQEQIPALEKEDEVDKDMLCPICMQ
IIKDAFLTACGHSFCYMCIVTHLHNKSDCPCCSHYLTTNHLYPNFLLNKLLMKRSARQMA
KSATPMEQLRQAIQQDSHLILRQGCDVSIKELESLLSLLMEKKRKMEQEEAETNLQILLE
FLQCLRKQKVEELNEIQNDLKYIKEDINAVEKRRIELYRARSRYSAKMRMLVDDSSAMTV
RPSLGDKEGGAIVSSSVGSQEQVRAGTTQTRNTDTRAPGISQLVQWKDDHGGSDSQHPNQ
PGQAIARKKRVHAQFNELQTCYLQKRRYWARQSEKEEERVANVMNREGYSAGLEDFRSVL
STFTRYSRLRVVAELRHSDLFHSANIVSSIEFDRDDELFATAGVSRRIKVFEFASVVNEP
ADAQCPIVEMSTRSKLSCLSWNKCTKNQLASSDYEGIVTVWDVTTRQSVMEYEEHEKRAW
SVDFCHTEPSLLVSGSDDCKVKVWCTKQEASVLTIDMKANICSVKYNPGSSVHVAVGSAD
HHIHYYDLRNVSQPLHILSGHRKAVSYVKFLSNNELASASTDSTLRLWDVKENVPLRTFK
GHANEKNFVGLSVNSEYLACGSETNEVFVYHKEISKPAAWHNFGSDDHNDPDGDMGSYFI
SAVCWKRDSPTLLTANSQGTIKVLVLAA
NT seq 2067 nt   +upstreamnt  +downstreamnt
atgggaggaggaggagagcgtttaatcggagctttagttccgacggttaaatcggagccg
gagaatgccggtgaaacttcagcaccggcggcggtgacggtggaggttcaggagcaaatt
ccggcgttggagaaggaagacgaagtggataaggatatgttatgtccgatatgtatgcaa
attataaaggatgcttttctgacggcgtgtggacatagcttttgttacatgtgcattgtt
actcatcttcacaataaaagtgattgtccttgttgttcgcattacttgactactaatcac
ctttaccctaattttctactcaataagttattgatgaagagatctgctcgccaaatggcc
aaaagtgcaacacctatggaacaacttcgccaagcaatacagcaggattctcatctgatt
cttaggcagggatgcgatgtgtccatcaaagagctggagagtctattatcactacttatg
gaaaagaaaagaaaaatggaacaagaagaagctgaaacaaatcttcagattctgcttgag
tttctccagtgtttaaggaagcaaaaagttgaagagcttaatgagatccaaaatgatctc
aagtacattaaagaagacataaatgctgtggagaagcgtagaatagagttatatagggca
aggagcagatattcagcgaaaatgagaatgctagtagatgattcttcggcaatgacagtc
aggccttcattgggagataaggaaggtggtgcaattgtttctagttctgtcggttcacaa
gaacaagttcgtgctggtactacacagaccaggaacactgatacaagagctcctggaata
tctcaacttgttcaatggaaggatgaccacggtggatcagattcacagcatcctaatcaa
cctggacaggcaatagcaaggaaaaaacgcgttcacgcacagttcaatgagcttcaaacc
tgttacctgcaaaagaggcgctattgggcaagacagtcagagaaagaggaagaaagggta
gcaaatgtcatgaatagagaaggttattctgcgggacttgaagattttcgatctgttctg
tctacctttacgcgatacagtcgtttgagggttgttgctgaacttagacattctgacctt
ttccactcagccaatatcgtttcaagtattgaatttgaccgagatgatgaattgtttgct
actgctggggtgtcacgaagaattaaggtctttgagtttgcatcggtggtgaacgaacca
gcagatgcgcaatgtcctattgttgaaatgtctacacgatccaaattaagttgtttgagc
tggaacaagtgcactaaaaaccagttagcaagcagtgactatgagggcatagtgacggtt
tgggatgttacaactcgtcagagtgtgatggagtatgaggagcatgaaaaacgagcatgg
agtgttgacttttgccatactgaaccttctctgcttgtgtccggtagtgatgattgcaag
gtcaaagtttggtgcacgaagcaggaagccagcgttcttacaattgacatgaaagctaac
atttgctcagtgaagtataatcctggatccagtgttcatgtagctgtgggttctgcagat
catcacattcactattatgacttgagaaatgttagccagccactgcatattttgagtggg
caccgtaaagctgtttcttatgtaaagtttttatccaacaatgagctagcttctgcatca
actgatagtacattgcgtttgtgggatgtcaaggagaatgttccactgcgtacttttaaa
ggacatgcaaatgagaagaactttgtgggtctttcagtaaacagtgaataccttgcatgt
ggcagtgagacaaatgaagtgtttgtatatcacaaggaaatttctaagccagcagcttgg
cacaactttggttctgatgatcataatgatccagatggggacatgggatcatatttcatc
agtgctgtttgttggaaacgtgacagcccaacacttctaacggcaaacagtcaagggaca
ataaaagtacttgtccttgctgcttga

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