Nicotiana attenuata (coyote tobacco): 109216507
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Entry
109216507 CDS
T05870
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 56-like isoform X1
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
nau
Nicotiana attenuata (coyote tobacco)
Pathway
nau03013
Nucleocytoplasmic transport
nau03015
mRNA surveillance pathway
nau03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
nau00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109216507
09122 Translation
03013 Nucleocytoplasmic transport
109216507
03015 mRNA surveillance pathway
109216507
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nau03019
]
109216507
03041 Spliceosome [BR:
nau03041
]
109216507
Enzymes [BR:
nau01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
109216507
Messenger RNA biogenesis [BR:
nau03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
109216507
Spliceosome [BR:
nau03041
]
Complex C
Other components
EJC/TREX
109216507
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
109216507
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
Motif
Other DBs
NCBI-GeneID:
109216507
NCBI-ProteinID:
XP_019236214
UniProt:
A0A1J6KQ37
LinkDB
All DBs
Position
Unknown
AA seq
428 aa
AA seq
DB search
MGENKENDAYEEELLDYEEDDEKAPDSVNGKVNGESAKKGYVGIHSSGFRDFLLKPELLR
AIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPVAGQVAALV
LCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKLHKELLKNECPHIVVGTPGRVLS
LARDKDLSLRNVRHFVLDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPV
CKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSETEKNRKLNDLLDALDFNQVVIFVKSVN
RAAQLDKLLVECNFPSICIHSGMTQEERLTRYKGFKEGHKRILVATDLVGRGIDIERVNI
VINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDVLNQVQERFEVDIKELPEQI
DTSTYMPS
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atgggagagaacaaggagaacgatgcttacgaggaagagcttcttgactacgaagaagat
gatgagaaggcccccgattccgtcaacggaaaagttaacggcgagtccgccaagaagggt
tatgttggaattcacagctccggattcagagactttcttttaaagccagagctactgagg
gctattgtggattcagggtttgagcatccctctgaagtgcaacatgagtgtattccacaa
gctattctgggtatggatgttatttgtcaagccaaatctggaatgggcaaaacggctgtt
tttgttctttcgactctgcaacagattgaacctgttgctggtcaggttgctgccttggtt
ctatgtcatacaagggaattagcttatcagatctgtcatgaattcgaaaggttcagcaca
tatttgcccgacatcaaggttgctgttttctatggtggtgtgaacatcaaacttcacaag
gagcttctgaagaatgaatgccctcacattgttgttggaactcctgggagagtactttca
ctggctagagataaggacctatctctaaggaatgtgaggcattttgttctggatgaatgc
gataagatgcttgaatcacttgacatgaggagagatgtgcaggaaattttcaagatgact
ccccatgacaagcaagtaatgatgttttcagcaacactcagcaaggagatccgcccagtt
tgcaaaaaatttatgcaagatcctatggaaatttatgttgacgatgaggccaagttgacc
cttcatggacttgtacagcactacattaaattgagcgaaaccgagaaaaaccggaaacta
aatgatctgctggacgccttggacttcaaccaagttgttatatttgtcaagagtgtaaat
cgggcagcacagctggataaattactagtggagtgtaattttccatctatctgcatccac
tctggcatgacgcaggaagaaagattgactcgctacaagggtttcaaggagggtcacaag
agaattcttgttgcaactgatctggttggtaggggcattgacatcgaaagggtcaacatt
gttattaactatgacatgccagattctgcagacacttatcttcacagagtgggtcgagct
ggtaggtttggaactaaaggccttgccatcacatttgtgtcatctgcatcagattctgat
gttctaaatcaggttcaagaaaggtttgaagtagacataaaagagcttcctgagcagatt
gatacttctacatacatgccatcttag
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