Nicotiana attenuata (coyote tobacco): 109217347
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Entry
109217347 CDS
T05870
Name
(RefSeq) uncharacterized protein LOC109217347
KO
K06100
symplekin
Organism
nau
Nicotiana attenuata (coyote tobacco)
Pathway
nau03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
nau00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
109217347
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nau03021
]
109217347
03019 Messenger RNA biogenesis [BR:
nau03019
]
109217347
Transcription machinery [BR:
nau03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
109217347
Messenger RNA biogenesis [BR:
nau03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
109217347
U7-dependent histone pre-mRNA processing factors
109217347
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
HEAT_EZ
HEAT_2
Adaptin_N
Motif
Other DBs
NCBI-GeneID:
109217347
NCBI-ProteinID:
XP_019237131
UniProt:
A0A1J6JXZ1
LinkDB
All DBs
Position
Unknown
AA seq
1328 aa
AA seq
DB search
MVGMMSPISRERIASLLNAAKFASDVPSKLHSLRRLNNELAGADSQLLSEFLPSLLDLVS
DRFSPVRKLTAEMVGYIGFKHGEFIPDIVPVLISALKDDTPAVARQAITCGIDIFRCTLV
KVAIQGLFSSELDDSLESAWAWVLKFREEIYTMAFQPASDGRRLLALKFVESVVLLYTPN
PSVSSEPPPALDIEGKFEQFNVSWLRGGHPILNVGDLSVEASQSLGLLLDQLRFPAVKSI
TNLMIIVLINCLSAIATKRPAFYGRILPVLLSLNPSSSDGNEKHVSGVYHALKNAFVSCL
NCTHPGAAPWRDRLEGALREKRAGFQAEPVLSHDSQNNGHVELKDVSSIPEESKPSVKAS
DSGQSKAGMKRSGVEDNAELVDDNLSKKRMRSAPIVLKEPKQERSANQERVSTGGSITTR
SDGDNVHLQPLVAMFGTLVAQGEKAAASLDILISSISADLLADVVMANMRNLPSNQPKVD
DDEEPPLKPEIESDFKQLSSLLSDVVSQSSMLAEKGEKDAQNLVSIEPELQQIKEGDEHL
DSVTTNVTSDALNYASEQAPEYVTEPLSSKSTPLLMENDVSAMQSDVADIENTEDFIPGL
DSVVRKDESSELVVVSSVDPTELEDGSQEQGSSLVRSSLEVVPSISTDRSEELSPKAAVT
DVTSVNSSTAASVGISPQLLLPKISAPVIHLPDEQKDNIQKSAFTRVIDAYKQVRVAGGS
QTRFSLLAYLGVEFSSELNPWKFLQTHILSDYVNHEGHELTLRVLYRLYGRAEEDQDFIS
STAAASVYETFLLTVAETLRDSFPASDKSLSRLLGEAPHLPNSVLKLLESFCCPGSSQKD
DKEIRSGDRVTQGLSTVWNLILMRPPTREACLRIALQSAVHHLEEVRMKAIRLVANKLYP
LTAISQQIEHFANEMLMSVSTVDHKADSNGDGSNPALQKDSASEKPTEEGPSSSITTKDV
SSDTLQSSTAGSISPFSIAEGQRCLSLYFALCTKKHSLFGQIFVVYSRASEAVQQAIHQQ
IHMLVRTIGSSSELLEIISDPPSGSEKLLMQVLQTLTEGTVPSLQLITTIRKLYETKVKD
VELLIMILPFLSKDEVLLLFPHVVNVPLDKFQGALSRILQGSAHSGPVLTPAEALIAIHR
IDPEREGIPLKKVTDACNACFEQRQTFTHQVLAKVLNQLVEQIPLPLLFMRTVIQAIGAF
PSLVDFIMEILSRLVSKQIWKYPKLWVGFVKCALLTKPQSFGVLLQLPPAQLENALSRTP
GLRAPLVAHANQPHIKSSLPRSVLTVLGIESDAQGSSQAPPNQSQTGDIGNSDKEALAEK
SRESSIAS
NT seq
3987 nt
NT seq
+upstream
nt +downstream
nt
atggtgggaatgatgtctccgatttcacgagaaaggatagcgagtttactcaacgctgcc
aagttcgcttccgatgttccgtcgaagcttcacagcttgcgccggttaaataatgaactc
gccggcgccgactctcagttgctctctgaattcctcccttctctccttgacctcgtatct
gatcggtttagccctgttcgtaaattaaccgctgagatggttggttatattggattcaaa
cacggagaattcatacctgatattgtacccgtgttgatctctgccttgaaggatgatacc
ccagctgttgctcgacaagcaatcacttgtggaattgatatatttcggtgtactctagtc
aaagttgcaatccagggcttgttttcaagtgaattggatgactctcttgaatcagcatgg
gcctgggtgctgaagtttagggaggagatatacacaatggcatttcagcctgcaagtgat
ggaagaagattgcttgcgctgaagtttgtggaatctgttgtgttactttacactccgaat
cctagtgtcagttcggagccaccgcctgctttggacattgaagggaagtttgaacaattc
aatgtttcgtggcttcgtggaggtcatccaatactaaatgttggggatttgtctgttgaa
gcaagtcaaagtttgggtctattgcttgatcagcttagatttcctgcagtgaagtcaatt
actaacttgatgatcattgtgctcattaactgtctttcagcaattgcgactaaaagaccg
gctttttatggtcgtattctgccagttctacttagcctgaatccttcaagctccgacggc
aatgagaagcatgtttctggggtataccatgctttgaagaatgcctttgtttcttgcttg
aattgtacacacccaggagctgcaccgtggcgggacagattagaaggtgcactcagagaa
aagagagcaggatttcaggcagaaccagttttaagccacgattcccagaataatggacac
gtagagttgaaggatgtttcatcaatcccagaggagtcaaagccttcagttaaagcatcg
gatagtggacaaagcaaagctggaatgaaaagatcaggggtggaggacaatgctgaactg
gtagatgataatctctctaagaagcgcatgcggtcggcacctattgtcttaaaggaacca
aagcaagagcgaagtgcgaaccaggagagagtttcaactggaggttctataacaaccaga
tcagatggagataatgttcatttgcaaccacttgttgcaatgtttggtacattagttgcc
cagggtgaaaaggctgcagcatcattagatattttaatctctagcatatcagctgactta
ctagctgatgttgtgatggctaatatgagaaatctaccttcgaatcagccaaaagttgat
gacgatgaagagccacctctgaagccagaaattgaatctgattttaaacaattgtcatca
ctgttgtcagacgtcgtttctcagtccagtatgttagcagaaaaaggcgagaaagatgct
caaaatttggtctccatcgagccggagttgcagcaaattaaagaaggagacgagcacctt
gattctgtcactactaatgttacatctgatgccctaaattatgcaagcgaacaagcaccg
gaatatgtaactgagcctctttcttccaaaagtacccctctactcatggagaatgatgtc
tcagcaatgcaatctgatgttgctgacattgaaaacactgaggatttcatacctggtcta
gattctgtagttcgcaaagatgaatcatcagagctcgtagttgtttcatcagttgatccc
actgaacttgaggatgggagccaagagcaagggtctagtttagtgaggtcatctttggag
gtagttccatcgatttcaactgataggtctgaggagcttagtccaaaagcagcagtaaca
gatgtaaccagcgtaaactcatcaacggcagcttctgttgggatttctccgcagttgctt
ctacccaaaatatctgctccagtcatccacctacctgacgaacagaaggataatatacaa
aagtcagctttcactcgtgtcattgatgcttataagcaagttagagttgctggaggttct
caaacccgcttttctcttcttgcctatttaggtgttgagttttcatcggagctaaaccct
tggaaatttctacaaacacatatattgtcagattatgtgaatcacgaggggcacgagttg
acattgcgtgtcctctacaggttgtatgggcgtgcagaagaagaccaggatttcatttct
tcaacagctgctgcatctgtatatgaaacatttctacttacagtggcagaaacacttaga
gattcttttccagcttctgacaaatctctaagtagattgcttggtgaagctcctcactta
ccaaattctgttctcaagttgttagagagcttctgttgtcctggtagttctcaaaaggat
gacaaggagatacgtagtggagatcgagtcactcaaggcctcagtactgtgtggaacctg
attctgatgagacctccaacgagagaggcctgtctcagaattgctttacagagtgctgtt
catcacttggaggaggtgcgcatgaaggcaatacggctggtcgccaacaagctttatcct
ctgacagccatctctcaacaaatagagcactttgccaatgaaatgttgatgtcagtttca
accgttgatcataaagcagactcaaatggtgatggatctaatcctgcattgcagaaggat
tctgcttcagaaaaacccacggaagaaggaccatcatcttctatcaccaccaaagatgtg
tcctctgacactcttcagtcatccactgctggaagcatatcaccattttcgatagctgaa
ggccagcgttgcttgtcgctctattttgcactgtgtactaagaagcactcactttttggc
caaatatttgttgtatatagtcgtgcatccgaggctgtacagcaggcaatacatcaacaa
atccatatgctagttcggacaattggttcttcatctgagctactcgagatcatatcagat
ccaccaagtggaagtgaaaagctattgatgcaggttttgcaaacgttgaccgaggggaca
gttccttccttacagttgataactactatcaggaagctatatgagactaaagtaaaggat
gttgaacttcttattatgatacttcctttcctgtcaaaggacgaggttttgctgcttttc
ccacatgttgttaatgttccattggataaattccaaggtgctctctctcgtattctacag
ggatcagctcactcaggtccagtgctaactcctgctgaagcattaattgctatccatagg
attgatcctgaaagagaaggcattccattgaagaaggtcacagatgcatgcaatgcttgt
tttgagcagagacagacattcacgcatcaggttcttgcaaaggtcttgaaccaattggtt
gaacaaattcctcttccgttgttgttcatgcggactgtaatacaagctattggtgctttt
ccatctctggtggatttcataatggagatcctctctcgtcttgttagtaagcagatatgg
aaatacccgaagctgtgggtaggatttgtgaaatgtgcccttttgaccaagccacaatct
ttcggagtgctgcttcagctacctccagctcagcttgaaaatgcattgagtagaacgcct
ggtctcagagctcctttagttgcacatgcaaaccaaccgcacataaaatcttcacttcca
aggtctgtcttaacggttcttggaattgaatcggatgctcaaggttcaagtcaagcgcct
cccaaccagtctcagacaggtgatattggcaattctgataaggaggcactcgctgagaaa
tcgagggaatcttcaattgccagttaa
DBGET
integrated database retrieval system
