Nicotiana attenuata (coyote tobacco): 109217808
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Entry
109217808 CDS
T05870
Name
(RefSeq) probable rhamnogalacturonate lyase B isoform X1
KO
K18195
rhamnogalacturonan endolyase [EC:
4.2.2.23
]
Organism
nau
Nicotiana attenuata (coyote tobacco)
Brite
KEGG Orthology (KO) [BR:
nau00001
]
09190 Not Included in Pathway or Brite
09191 Unclassified: metabolism
99980 Enzymes with EC numbers
109217808
Enzymes [BR:
nau01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.23 rhamnogalacturonan endolyase
109217808
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rhamnogal_lyase
CBM-like
fn3_3
CarboxypepD_reg
CarbopepD_reg_2
Y_Y_Y
EMC7_beta-sandw
Motif
Other DBs
NCBI-GeneID:
109217808
NCBI-ProteinID:
XP_019237625
LinkDB
All DBs
Position
Unknown
AA seq
603 aa
AA seq
DB search
MSTQLLQLIQQQDQQVVIDNGVFQLRLTNPGGKIIGIQYNGVDNLLELNNQSLNGGFWDL
NWSEPGTAGTRGKFDEFIVLRDSPGFYSYAIYEHKEDMPAFNLNETRIAFMLSIEKFRYM
VMADDRQRLMPLPEDRVPPRGKELVYPEAVLLVDPVEPEFKGEVDDKYQYSCENKDNKVH
GFICLDPPVGFWQITPSNEFRTGGPIKQDLTSHVNPTTLAMFVSTHYGGQDFVIKFGSGE
LWKKVFGPVFIYLNSVAEKHDTLSLWNDAKERMHKEVDCWPYSFPSSEDFPKADQRGAIR
GRLVVHDRYISKEHLSAKGAFVGLAPPGDAGSFQRECKGYQFWTNSNDEGHFSIKNVRPG
EYNLYAWVPGFIGDYRYEKSIAVSAASEVDVGELVYEPPRSGPTLWEIGIPDRSAAEFYI
PDPNPQYINKLYLNQPAHRFRQYGLWERYADLYPDQDLVYIVGSSDYRKDWFYAQVTRRV
GDRAFEPITWQIIFSLDSIHQTGNYTLRIALSSATQSILEVRVNDAEANPPHFSSGLIGS
DNAVARHGIHGLYWLFNVEVAAGQLIQGQNIIYLKQAWSVSALHGIMYDYIRLEAPPLSA
THY
NT seq
1812 nt
NT seq
+upstream
nt +downstream
nt
atgtcaacccaacttcttcagcttattcagcaacaggaccaacaggtggtaatagataat
ggcgtattccaactcagattgacaaatccaggaggcaaaattattggtattcaatataat
ggggttgacaatttgctggagctcaacaaccaaagcttgaatggaggattctgggactta
aactggagtgaacctggaactgctggaacaagaggaaaatttgatgagttcatagttctt
cgggattcgcctggtttttactcttatgctatttatgaacacaaagaggatatgccagca
ttcaacctcaatgaaaccaggatagctttcatgctcagcatagaaaagttccggtacatg
gttatggcagatgataggcaaaggctaatgcccctccctgaagatcgtgtacctccaaga
gggaaggaattggtgtatccagaagctgtcctacttgtcgatcctgtagaaccagaattt
aaaggagaagttgatgacaagtaccaatattcgtgtgagaacaaagataacaaagtccat
ggtttcatttgcttagatcctccagtgggattttggcaaattactccgagcaatgagttt
agaacaggtggacctatcaaacaggatcttacttcccatgttaatccaaccacccttgct
atgttcgtgagcactcattatggagggcaggatttcgtgattaaatttggatcaggtgaa
ctgtggaagaaagtttttggtcctgtttttatatatctcaattctgtagcggaaaaacac
gatacactttccctttggaatgatgctaaagaacggatgcacaaagaagtcgactgttgg
ccttatagtttcccaagttcagaagattttccaaaagctgaccaaaggggtgccatccgt
ggtagattagtagtccatgacaggtacataagcaaggagcatttatctgcaaagggtgct
tttgtggggctagctccacctggagatgctggatcatttcaaagagaatgcaagggctac
caattctggacaaactcaaatgatgaaggccatttttcaatcaaaaatgttcgtcccggg
gagtataacctctatgcttgggtacctggatttattggagattatagatatgaaaaatcc
atagcagtttctgcagcttctgaggttgatgttggtgaacttgtgtatgagcctccaaga
agcggtcctacattgtgggaaatcggcattcctgatcgctctgctgcagaattctacatt
cctgaccctaatccacagtatattaacaaactttacctaaatcaaccagcacacaggttt
aggcagtatggattatgggagagatatgcagatttatatccagatcaagatttggtatat
atagttggaagtagtgattatagaaaagattggttctatgctcaagtgaccagaagagtg
ggtgatagggcatttgaacctataacctggcaaattatattcagcttagatagcattcat
cagactggaaattacacactgcgaattgcactctcatctgcaactcaatcgatattggag
gtaagggtgaatgatgcagaagcaaatccaccccatttctcaagtggactgattggaagt
gacaatgcagttgccagacatggaatccacgggctatattggctgttcaacgtagaggtc
gctgcaggacaactcattcaaggacagaatatcatatatctcaaacaagcatggagtgtc
agtgctttgcatgggattatgtacgactatattcgtctggaagctcctcctctttctgcc
acgcactattag
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