Nicotiana attenuata (coyote tobacco): 109218520
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Entry
109218520 CDS
T05870
Name
(RefSeq) DNA damage-binding protein 1 isoform X1
KO
K10610
DNA damage-binding protein 1
Organism
nau
Nicotiana attenuata (coyote tobacco)
Pathway
nau03420
Nucleotide excision repair
nau04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
nau00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
109218520
09124 Replication and repair
03420 Nucleotide excision repair
109218520
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
nau04121
]
109218520
03400 DNA repair and recombination proteins [BR:
nau03400
]
109218520
Ubiquitin system [BR:
nau04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Adoptor protein
109218520
DNA repair and recombination proteins [BR:
nau03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Cul4-DDB2 complex
109218520
TCR (transcription coupled repair) factors
Cul4-CSA complex
109218520
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_2nd
CPSF_A
Beta-prop_RSE1_1st
Motif
Other DBs
NCBI-GeneID:
109218520
NCBI-ProteinID:
XP_019238432
LinkDB
All DBs
Position
Unknown
AA seq
1095 aa
AA seq
DB search
MSIWNYVVTAHKPTNATHSCVGNFTAPHELNLIIAKCTRIEIHLLTPQGLQCIRLQPMLD
VPIYGRIATLELFRPHGETQDFLFIATERYKFCVLQWDAEASEVITRAMGDVSDRIGRPT
DNGQIGIIDPDCRLIGLHLYDGLFKVIPFDNKGQLKEAFNIRLEELQVLDIKFLYGCPKP
TIVVLYQDNKDARHVKTYEVSLKDKDFIEGPWAQNNLDNGASLLIPVPPPLCGVLIIGEE
TIVYCSASAFKAIPIRPSITRAYGRVDADGSRYLLGDHNGLLHLLVITHEKEKVNGLKIE
LLGETSIASTISYLDNAFVFIGSSYGDSQLVKLNLQPDAKGSYVEVLERYVNLGPIVDFC
VVDLERQGQGQVVTCSGAYKDGSLRIVRNGIGINEQASVELQGIKGMWSLRSATDDPYDT
FLVVSFISETRVLAMNLEDELEETEIEGFNSQVQTLFCHDAIYNQLVQVTSNSVRLVSSI
SRDLKNEWFAPAGYSVNVATANATQVLLATGGGHLVYLEIGDGVLNEVKYAKLDYDISCL
DINPIGENPNYSQIAAVGMWTDISVRIYSLPDLNLITKEQLGGEIIPRSVLMCSFEGISY
LLCALGDGHLLNYVLSMSTGELTDRKKVSLGTQPITLRTFSSKDATHVFAASDRPTVIYS
SNKKLLYSNVNLKEVSHMCPFNVAAFPDSLAIAKEGELTIGTIDEIQKLHIRSIPLGEHA
RRISHQEQTRTFALCSVKYTQSNADDPEVHFVRLLDDQTFEFISTYPLDQFEYGCSILSC
SFSDDSNVYYCVGTAYVMPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAFNGK
LLAAINQKIQLYKWASREDGGSRELQTECGHHGHILALYVQTRGDFIVVGDLMKSISLLI
FKHEEGAIEERARDYNANWMSAVEILDDDIYLGSENNFNLFTVRKNSEGATDEERSRLEV
VGEYHLGEFVNRFRHGSLVMRLPDSDVGQIPTVIFGTVNGVIGVIASLPHDQYLFLEKLQ
TSLRKVIKGVGGLSHEQWRSFYNEKKTVEAKNFLDGDLIESFLDLSRSRMEDISKAMAVP
VEELMKRVEELTRLH
NT seq
3288 nt
NT seq
+upstream
nt +downstream
nt
atgagtatatggaactatgtggttacggctcacaagccaacgaacgctacacattcctgt
gttggcaatttcaccgctcctcacgagctcaatcttatcattgcgaaatgtactcgaatc
gagattcatttactcactccccaaggtttacagtgtattcgtctgcagcctatgttagat
gtgccaatatatgggagaatcgcgacactcgagcttttccgtccccacggtgaaacacaa
gattttctcttcattgcgacggagcgatataaattctgtgtccttcaatgggatgctgag
gcatctgaagttatcacaagagcaatgggagatgtctcagatcgaataggccgtcccacc
gataacggtcagattggtataatcgacccagactgcagattgatcgggttgcatctttat
gatggactatttaaggttattccatttgataacaaaggccaactgaaggaagcctttaac
atcaggcttgaggagcttcaagttttggatattaaattcttatatggttgcccaaagcct
acaattgttgttctatatcaggataacaaggacgcccgacatgtcaaaacatatgaggtg
tcgttgaaggataaagattttattgaagggccatgggctcagaataatctcgataatgga
gcttctttgctaataccagtacctccgccactgtgtggtgtactgattattggagaagaa
accatagtttactgtagcgcttcagcttttaaggctatcccaattagaccttctatcaca
agagcatatgggcgggttgatgctgatggttctcgatatttgcttggggatcataatggg
cttcttcacctacttgtaatcactcatgaaaaggaaaaagttaacggactcaaaattgag
ctactgggagaaacttctattgcatcaaccatatcatacctagacaatgcttttgtcttc
attgggtcaagctatggagattcacagctcgtaaagctcaatctccagcccgacgccaaa
ggttcttatgtggaagttctagagagatatgtcaatttgggaccaattgtggacttctgt
gttgttgacctggagaggcaaggtcaaggtcaggtcgtgacttgctctggagcctataag
gatggctcacttcgtattgttcgaaatggaattggaataaatgaacaggcgtctgtggaa
ctacaagggatcaaaggaatgtggtcccttagatcagctactgatgatccatatgacaca
ttcttggttgttagcttcattagcgagacacgtgttttagctatgaaccttgaggatgag
ctggaagaaactgagatagaaggcttcaattctcaagtccagaccttgttttgtcatgat
gctatatacaaccagcttgtacaggttacttctaactctgtaagattggtcagctctatc
tctagagatctgaaaaacgaatggtttgctccagccggctactcagtcaatgttgcaact
gctaatgccactcaggtactgttggcaactgggggtggccatctggtctacctagaaatt
ggtgatggggtgctgaatgaagtaaaatatgccaagttggattatgatatctcatgcctg
gacataaatccaattggtgagaatccaaactatagtcaaattgcagcagttggaatgtgg
acagacataagtgtcaggatatattcacttcccgacttgaatctcattacaaaggaacag
ctaggaggggagataattcctcgttcagttcttatgtgttccttcgaagggatatcttat
ctactatgtgctttgggagatggtcatctcttgaattatgtattgagcatgagtactggt
gagctgacagacaggaaaaaagtgtctcttggaacccagcccataacacttcgtacattc
tcatctaaagatgctacgcacgtctttgctgcctccgataggcccacagttatttacagc
agtaacaagaagctgctttatagcaatgtaaatctaaaagaagttagtcatatgtgccca
ttcaatgttgcagcttttccagacagcctcgcaattgcaaaagaaggagagttaacaatt
ggcactattgatgaaattcaaaagcttcacatccgttcaatacccctcggggagcatgca
cggcggatcagccatcaagagcagaccaggacatttgctctatgcagcgtcaagtatact
cagtcgaatgcagatgatcctgaagtgcattttgtccgcctgttagatgatcagacattt
gagttcatatcaacttacccccttgaccaatttgaatatggttgttccatacttagctgc
tccttttctgatgacagtaatgtgtattattgcgttgggactgcttatgtgatgccagag
gaaaatgaacctaccaagggccgaattttagtttttatagttgaagatggaaagctccaa
ctaattgcagagaaggaaactaagggagctgtctactctctaaatgccttcaatgggaaa
ctgcttgctgcaatcaatcagaagattcagttgtacaagtgggcctcgcgtgaagatggt
ggcagccgagaattgcagacagaatgtggacaccatggtcatatattggctctttatgtt
caaacacgtggggattttattgtcgttggtgatttgatgaagtccatttctctactgatt
ttcaagcacgaggagggtgctatagaggagcgagcccgggactataatgcaaattggatg
tcagctgtcgagattctcgacgatgacatttatcttggttcggagaacaactttaacctt
ttcacggtcaggaaaaatagtgagggtgctacagatgaagagcgcagccgtcttgaagtg
gttggtgaataccaccttggtgaatttgttaataggtttagacacggttcacttgtcatg
cggttgccagattcagatgttggccagatacctaccgtcatatttggcacagtgaatggt
gttattggggtcattgcctcgcttcctcatgatcagtatttatttttggaaaagctgcag
acaagcttaaggaaagtgattaagggtgtaggcggactgagccatgagcagtggaggtcg
ttttacaatgagaagaaaactgtagaagctaaaaactttcttgacggagatttgattgaa
tcattcctagatcttagcaggagccggatggaagatatttctaaagcaatggcagttcct
gttgaggaactaatgaagagagtggaagagttgacaaggttgcattag
DBGET
integrated database retrieval system
