Nicotiana attenuata (coyote tobacco): 109219423
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Entry
109219423 CDS
T05870
Name
(RefSeq) cleavage stimulation factor subunit 77
KO
K14408
cleavage stimulation factor subunit 3
Organism
nau
Nicotiana attenuata (coyote tobacco)
Pathway
nau03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
nau00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
109219423
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nau03019
]
109219423
Messenger RNA biogenesis [BR:
nau03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
109219423
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Suf
HAT_PRP39_N
HAT_PRP39_C
HAT_Syf1_CNRKL1_N
TPR_14
TPR_19
HAT_Syf1_CNRKL1_C
TPR_15
TPR_16
TPR_CcmH_CycH
TPR_2
TPR_Slam
TPR_9
Iml2-TPR_39
ANAPC3
Motif
Other DBs
NCBI-GeneID:
109219423
NCBI-ProteinID:
XP_019239429
UniProt:
A0A1J6JV52
LinkDB
All DBs
Position
Unknown
AA seq
739 aa
AA seq
DB search
MTEKYNVEAAEILANEALRLQISEAVPIYEQLLSTFPTAAKYWKQYVEAHMAVNNDDATK
QIFSRCLLNCLQIPLWRCYIRFIRKVNDKRGNEGQEETRKAFDFMLNYVGADIASGPVWM
EYIAFLRSSPAQTTQEESQRMTSVRKAYQRAIVTPTHHVEQLWRDYENFENSISRALAKG
LVSEYQPKYNSARAVYRERKKYIDEIDWNMLAIPPSGSSKEEMQWMAWKRLLAFEKANPQ
RIDSASANKRIVFTYEQCLMYLYHYPDIWYEYATWHAKAGSIDSAIKVFQRALKALPDSE
MLRYAYAELEESRGALQAAKKVYENLLGDGSNASALSHIQFIRFLRRSEGVEAARKYFLD
ARKSPNCTYHVYVAHAMMAFCLDKDAKMAHNVFEAGLKRFMHEPGYILEYADFLYRLNDD
RNIRALFERALSSLPPEESVEVWKKFSQFEQTYGDLASMLKVEQRRKEALSRTGDDGTSE
LESSLQDVVSRYSFMDLWPCSSNDLDHLARQEWLARNINKKTDKPTLGIEAGSADKTSSG
VLSNTNPPAKVVYPDTSKMTIYDPRQMSGPAALAVPSASGTLPYSGSSGGPPNALNDILK
SLPPAFAAFMANLPAVEGPTPDADFVISVCLQSNIPLATGKSGTASFPLQSGPAPSTSDI
SDSSKFRSRDRQTGKRKDMDRQEDDESSTVQSQPLPRDVFKIRQLQKNRVASSSRVTSSY
TGSASYGSALSGDLSGSTG
NT seq
2220 nt
NT seq
+upstream
nt +downstream
nt
atgacggaaaagtataatgttgaagctgcagaaattcttgctaacgaggcactgcgcttg
caaatttcagaagcagtgccgatatatgagcaacttctgtccacgtttcccactgcggca
aaatactggaagcaatatgttgaggcacacatggcggtaaataatgatgatgcaacaaag
caaatatttagtcgctgcctcttgaactgtctacagattcctctttggcgctgttacatc
cgctttatcaggaaagtcaatgacaagagggggaatgagggtcaagaagagacaagaaag
gcttttgatttcatgcttaactatgttggagcagacattgcatctggtccagtgtggatg
gagtacattgcatttttaaggtcttcgcctgctcaaaccacgcaagaagaatcacaacga
atgacctctgtgaggaaagcataccaaagagctattgtcaccccaacccatcacgtggaa
cagctttggagggactatgagaattttgaaaattcaattagtcgagccttggcaaaaggg
ctggtgtctgaataccaaccaaaatataacagtgcgagggctgtatacagagaaaggaag
aagtacattgatgaaattgattggaatatgctagcgattccaccttccggctcttccaag
gaggaaatgcaatggatggcatggaaaagacttctagcctttgagaaagcaaaccctcag
aggatagacagtgcttctgctaataaaagaattgtgttcacatatgagcagtgcctcatg
tatttgtatcattatcctgacatatggtatgaatatgctacatggcatgcgaaagctggt
tcaatagactctgctatcaaggttttccagcgagctctaaaagctcttcctgactccgaa
atgctcagatatgcttatgctgaacttgaggaatcacgtggagcccttcaggctgctaaa
aaagtatatgaaaatcttctgggggatggatccaatgcctcagcactgtcacatatccag
tttataaggtttttaagaagaagtgaaggagttgaagcagctcgcaaatactttcttgat
gcacggaaatctccaaattgcacttaccatgtctatgtagctcacgcgatgatggctttt
tgtcttgacaaggatgcaaagatggcacacaatgttttcgaagcagggttgaaacgcttt
atgcatgagcctggatacatccttgagtatgcagatttcctttatcgtttaaatgacgat
agaaacatcagagcattatttgaacgtgcattgagctcactccccccagaggaatctgtt
gaggtttggaaaaaattctctcaatttgagcaaacgtatggagatcttgccagcatgttg
aaggttgagcagagaaggaaagaagctctttccagaacaggtgatgatggaacatcagag
ttagagagttcattgcaagatgttgtatcacgctacagtttcatggatctgtggccttgc
tcttcaaatgacttggatcatctagcacgccaagagtggctcgcgaggaacatcaacaaa
aaaactgacaaacctactcttggtattgaggcaggttctgcagataagacttcttctggt
gttttgtccaacacaaatccccctgccaaggttgtgtatccagatacttcaaaaatgaca
atttatgacccaaggcaaatgtcaggtcctgctgctcttgcggttccatctgcttcaggc
accttaccttattctggtagcagtggtggaccaccaaatgctcttaatgatattctgaaa
tcgttgccccctgcatttgcagcgttcatggcaaatttgccagctgttgaaggtcctact
cctgatgctgattttgtgatatccgtatgtttgcaaagcaacattcctttagcaaccgga
aaatcaggaaccgcctcttttccgttgcagtcaggccctgctccatctacgagtgacatc
tctgattcaagcaaattcaggtcgagagacagacagactggaaagaggaaagacatggat
aggcaagaggatgatgaatcgtcgaccgtacaaagccagccccttcctagagatgttttc
aagattcgccaattacaaaaaaaccgtgttgctagttcgtctcgagttactagttcatac
actggatcagcttcttatggtagtgctctttctggagacctctcgggcagcactggttga
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