Nicotiana attenuata (coyote tobacco): 109220157
Help
Entry
109220157 CDS
T05870
Name
(RefSeq) probable pectate lyase 16
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
nau
Nicotiana attenuata (coyote tobacco)
Pathway
nau00040
Pentose and glucuronate interconversions
nau01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
nau00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
109220157
Enzymes [BR:
nau01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
109220157
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
Motif
Other DBs
NCBI-GeneID:
109220157
NCBI-ProteinID:
XP_019240166
UniProt:
A0A1J6JRR9
LinkDB
All DBs
Position
Unknown
AA seq
399 aa
AA seq
DB search
MAKLTSLQLLSWLLIICSVSTIVASKSSDEHETKAVDDYLPSYYAQPHKNLLNVIDSCWR
LNHDWSSNRKALADCAIGFGSNAVGGKYGDIYVVTDPSDDPANPEPGTLRYGAIQSEPLW
IIFKKDMVLTLKNELMVNSHKTIDGRGAKIEISNGPCITLDYVTNVIIHGISIHDCKPSK
KGMVRSSPEHVGERSGSDGDAISVFGSSNVWIDHCYLARATDGLLDVIHASTAVTISNNY
FTEHDKVMLLGHNDEYTADKSMKVTVVFNHFGRELVQRMPRVRHGYAHVANNYYDQWLMY
AIGGSADPTIFSEGNYFIAPDSYDKEVTKRETHEGGWKSWKWRSSKDVFVNGAYFSPSGY
GSIAPKYTRGQSFIVSQGSLTPSLTSDAGPLQCVVNEPC
NT seq
1200 nt
NT seq
+upstream
nt +downstream
nt
atggcaaagttaacttccctccaactactttcatggcttctaataatatgttcagtttct
acaatagtagctagtaaatcaagtgatgaacatgaaactaaagctgtagatgattatctt
ccaagttattatgctcagcctcacaaaaacctccttaatgtcatcgattcgtgctggaga
ttgaaccacgattggtcatccaatcgcaaggctttagcagattgtgctataggctttggg
agtaatgctgtaggaggtaaatatggtgacatttacgtggtcactgacccttctgatgat
cctgcaaatcctgaaccaggcactcttaggtatggtgcaattcagtccgagccactttgg
atcattttcaaaaaggatatggtacttacacttaagaatgagcttatggtcaatagtcac
aagactatagatggaagaggtgccaaaattgagatttctaatggtccatgcattacattg
gactatgttacaaatgttattattcatgggattagtattcatgattgtaagcctagtaaa
aaagggatggttcgtagtagtcctgaacatgttggtgaaagatcaggctctgatggtgat
gccataagtgtgtttggatcgtcgaatgtttggattgatcattgttatcttgctcgtgca
acggatggtctactcgatgttattcatgcttcaactgcagtaactatatcgaacaattac
ttcactgaacatgacaaagttatgttgttggggcacaatgatgaatatactgcagacaaa
agcatgaaagtcacggtagttttcaaccattttggccgtgaactagttcaaagaatgcca
agggttaggcatggttatgctcatgtggctaataattattatgatcaatggttaatgtat
gccattggtgggagtgcagatccaacaatattcagtgagggaaattatttcattgctcca
gactcatatgacaaagaggtcaccaagagggaaactcatgaagggggatggaagagttgg
aaatggaggtcctcaaaagatgtgtttgtgaatggagcatattttagtccatctggatat
ggaagtattgctccaaaatacacaagaggacaatcgtttattgtttctcaaggatcgtta
actccctctttaacttctgatgctggtcctcttcaatgtgttgtcaatgaaccttgctaa
DBGET
integrated database retrieval system
