Nicotiana attenuata (coyote tobacco): 109220496
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Entry
109220496 CDS
T05870
Name
(RefSeq) poly(A)-specific ribonuclease PARN-like isoform X1
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
nau
Nicotiana attenuata (coyote tobacco)
Pathway
nau03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nau00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109220496
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nau03019
]
109220496
Enzymes [BR:
nau01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
109220496
Messenger RNA biogenesis [BR:
nau03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
109220496
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
109220496
NCBI-ProteinID:
XP_019240509
UniProt:
A0A1J6JR14
LinkDB
All DBs
Position
Unknown
AA seq
621 aa
AA seq
DB search
MLQRRLFCTRISKTILQSNPGHNHSKWSVKQVPKSNFSAALEEISTFISDSDFIAVSLKN
TGAYSAPWQRILPIDTAHTAYLKAKDAAERFQVLQFAVCPFSIRGSKLIVHPYNFHLFPR
DELKIGMPSYSFSCQSSYLTSMAREGFDFNACIYDGISYLSRSQESAAIDRIGNASHITR
TVQSPSGHTVADSVFAERIKSRVKHWISSCRDTNKKPEDALISSLRKIVSGDEVYGSRPC
LSIDVCSERQVHLVLETLKDFVDVIPLLNPAKGGTTMSVRVVLTSSEEDKILLQKELQNE
EKEHNKRIRGFREVIDLISASQKPVVAHNSLNDFTFVHSKFLAPLPSTLDEFKSSLCEVF
PNVLDVNHLMKEISLLKKVNNLPASISYLKQRFFAPVDMEISNQAAEATEVKTLGHDVLK
ISELFAKLYSILKIAPKAPEAAEGHLPDAIECYINLFNPCFASSHGLADEGVSVWTDNTR
KISIKNLVFLWGFRGGTSAGQLKSLLYGSHEVFHNEFDVRLVDKSCAVVVFGNPGFSEVL
LQLMDSGGICTSTLTEMLADGLTAAGYEVYQKVCELGLWEADLASSFERALEENDSFSEA
HSQELPGICWNNDEMINLDDL
NT seq
1866 nt
NT seq
+upstream
nt +downstream
nt
atgttacagaggcgcttattttgcacgaggatttcgaaaaccatcctccaatcaaacccc
ggacataatcatagcaaatggagtgtaaagcaagttccaaagtccaatttctcagcggca
ttagaagagataagtactttcatctccgactctgatttcatcgccgtctcattgaagaat
actggggcctactctgcaccctggcagcgtattctgccaattgacaccgcacacaccgcc
tatctcaaagccaaagacgccgccgaacggtttcaggtccttcagttcgccgtttgccct
ttctccattagaggttccaagcttatcgttcacccatacaactttcatttgttccctcgt
gatgagttaaaaatagggatgccttcttatagtttctcttgtcaatcatcatatttgacc
tctatggctcgagaaggttttgatttcaatgcctgcatatatgatggcatatcatattta
tccagatcgcaagaatcagctgcaatagatagaattggaaatgcatcacatattacccgt
acagtgcaatctccatcagggcatacagttgctgattccgtatttgcagaaaggatcaaa
tctcgagttaagcattggataagttcttgcagagacaccaacaagaagcctgaagatgct
ttaatcagttccttgagaaaaattgtctcgggtgatgaagtatatggatccagaccatgc
ttgagcatagatgtatgcagtgaacgtcaagtgcaccttgtgttggagacactgaaggat
tttgttgatgtcatacctttactaaacccagcaaagggagggacgacaatgtctgttcga
gttgttttgacaagttcagaagaagacaaaattcttttacagaaggaacttcaaaatgag
gagaaggagcataataagcgcattcgtggctttcgagaggtgatcgatttgatttccgct
tctcagaaacccgttgttgcccacaactctcttaatgattttacctttgtccattccaag
ttcttagctccattgccatcaacgctggatgaattcaaaagttcattatgtgaggtcttc
ccaaatgtacttgatgtcaaccatcttatgaaggaaatcagccttctgaaaaaagtgaac
aatttgcctgcaagtatctcatatttgaaacaaagattttttgcccctgttgatatggag
atatctaaccaagcagctgaggccacagaagtgaagactctgggacatgatgttttgaag
ataagcgaattgtttgcgaagctgtactccatactgaaaattgctccaaaagctcctgaa
gctgctgagggccatttgcctgatgcaattgaatgctacataaacttgttcaacccttgc
tttgccagttctcatggtcttgctgatgaaggtgttagtgtgtggactgacaatactaga
aaaattagtattaagaatctagttttcctatggggattcaggggtgggacatctgcagga
cagctgaaaagcctcctatatggttcacatgaagttttccataatgaatttgatgttagg
ctagtggataaaagttgtgctgtagttgtttttgggaaccctggcttttcggaagtcctg
ttgcagctaatggattctggaggtatctgtactagtaccctgacggagatgctggcagac
ggcctgacagccgcaggttatgaggtgtaccaaaaagtctgtgagttaggtctatgggaa
gcagatttggccagttcattcgaaagggctttggaagaaaatgatagcttctcagaagct
cactcacaggagctcccggggatatgttggaataatgatgaaatgattaacctggatgac
ctttaa
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