Nicotiana attenuata (coyote tobacco): 109220787
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Entry
109220787 CDS
T05870
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH1 isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
nau
Nicotiana attenuata (coyote tobacco)
Pathway
nau03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nau00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109220787
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nau03019
]
109220787
03012 Translation factors [BR:
nau03012
]
109220787
Enzymes [BR:
nau01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
109220787
Messenger RNA biogenesis [BR:
nau03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
109220787
Translation factors [BR:
nau03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
109220787
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
HA2_N
DEAD
AAA_22
SR-25
nSTAND3
NACHT
T2SSE
AAA_19
Myosin_head
Motif
Other DBs
NCBI-GeneID:
109220787
NCBI-ProteinID:
XP_019240800
UniProt:
A0A1J6K4H5
LinkDB
All DBs
Position
Unknown
AA seq
1036 aa
AA seq
DB search
MSVRLLNPHSSALHFHFRNSLSSSAPRSFVLSHFRLKSSAMSYRPNSRGGRRGGGGGGGG
RGGAGRSGGGRGGGGRGGEQRWWDPVWRAERLRQQAAQMEVMNENEWWGKMEQFKRGGEQ
EMVIRRNFSRDDQQKLADMAYQLELYFHAYNKGKALVASKVPLPSYRADLDERHGSTQKE
IRMSTEIEERVGNLLSSSQDTVSGGTSSSTSGSSAKLSSKALETARPKLTVENDTAKRRL
NNELKQKQEKTRESEKVKAMISFREELPAFKVKYEFLEAVASNQVLVVSGETGCGKTTQL
PQFILEEEISSLRGADCNIICTQPRRISAISVAARICSERGENLADTVGYQIRLESKRSA
QTRLLFCTTGVLLRRLVQDPDLTGVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDLRLI
LMSATINAELFSKYFRNAPNIHIPGLTYPVAELFLEDVLEKTRYLIKSEADSFQGSSRRR
QRQQDSKRDPLTDLFEDVDIGSHFKGYSMTTRESLEAWSGSLLDLGLVEATIEYICRREG
EGAILVFLTGWDDISKLLDKIKVNNFLGDTRKFLILPLHGSMPTINQREIFDRPSANMRK
IVLATNIAESSITIDDVVYVIDCGKAKETSYDALNKLACLLPSWISKASAHQRRGRAGRV
QPGVCYRLYPKLIHDAMPQYQLPEILRTPLQELCLQIKSLQFGAIESFLAKALQPPDPLS
VHNAIELLKTIGALDDTEELTPLGRHLCTLPLDPNIGKMLLMGSIFQCLNPALTIAAALA
HRDPFVLPINRKEEADAAKRSFAGDSCSDHIALLKAFEGWKDAKHYRKERAFCWENFLSP
VTLQMLEDMRNQFVDLLSDIGFVDKSRGAKAYNEYSNDLEMVCAILCSGLYPNVVQCKRR
GKRTAFYTKEVGKVDIHPASVNAGVHLFPLPYLVYSEKVKTTSIYIRDSTNISDYALLMF
GGNLSPSKSGEGIEMLGGYLHFSASKSVLDLIKKLRGELDKILKRKIEEPGFDISVEGKG
VVGAVVELLHSQDIRY
NT seq
3111 nt
NT seq
+upstream
nt +downstream
nt
atgtcagtgcgccttctgaacccccactcctccgcccttcattttcacttccgcaactcc
ctttcttcatcagccccaaggagtttcgttctctcacattttagattaaaatcatccgct
atgtcttatcgtccgaacagccgaggcggccgtcgtggcggcggcggcggcggcggaggc
cgcggtggcgcaggccgcagtggcggtggtcgtggaggaggaggacgcggtggtgaacag
agatggtgggaccctgtctggcgtgccgaacgccttcggcaacaagccgctcagatggag
gtgatgaatgaaaatgagtggtgggggaagatggagcagtttaagagaggaggcgagcag
gaaatggtaataaggcggaattttagtagggatgaccagcagaagttggctgatatggcg
tatcaattagagctttacttccatgcttataacaaaggaaaggcacttgttgcaagcaaa
gtcccattgccaagctatcgagctgatcttgatgagcgtcatgggtctacacagaaagag
ataaggatgtctacggagattgaggaaagagtgggaaatctattgagtagttcacaagat
actgtatctggtgggacttcctcttcaacatctggtagttctgccaagttatcatccaaa
gctctggaaacagccagacctaagttgactgtagagaatgatactgccaagcggagactt
aataatgaacttaaacagaaacaggaaaagacaagggaaagtgaaaaagtcaaggcaatg
atctcattcagggaagaacttccagcatttaaagtaaaatatgaatttttggaagctgtt
gctagtaatcaggttttggtagtttctggagaaactggttgtggcaagaccactcagctc
cctcaattcattctagaagaggagatatcatccctccgtggtgctgactgtaacattata
tgcactcagcctcgccgtatatctgccatatcagttgcagctagaatatgctctgaaaga
ggagagaatcttgctgatactgttggttaccagatccgactggagtcaaagcgctctgct
caaacgcggttgctattttgcacaacaggagtgttattgcggcggctggttcaggaccct
gatttgactggtgttagccatctgcttgttgatgaaatccatgaaagaggcatgaatgaa
gactttctcttaataattttacgtgacctccttcctcgacgacctgatttgcgtctcatt
ctgatgagtgctactattaacgctgagttgttctccaaatacttcagaaatgcacccaat
attcatataccgggcttgacatatccagtggcagagctgtttcttgaagacgtgttagag
aagactcgttaccttataaaatccgaagcagacagtttccagggaagctcaaggagaagg
cagaggcaacaagattctaaaagagatcctctgactgatctttttgaggatgtggacatt
ggttcccattttaaaggctacagcatgactacaagagaatctcttgaagcgtggtctggt
tcgctgcttgatttgggtcttgtggaagcaacgattgagtatatttgtcgtcgtgaaggt
gaaggtgcaattcttgtattcctgactggttgggatgacatttctaagctgcttgataaa
attaaggttaacaacttccttggagacaccaggaagtttttgatcctccctcttcatggt
tcaatgccaacaataaatcaacgagaaatatttgaccgcccatctgctaacatgaggaaa
attgtgcttgcaaccaacatagctgagagcagtataactatagatgatgtcgtgtacgtc
atagactgtggaaaggcgaaagagactagttatgatgctcttaacaagctagcttgttta
ttaccatcatggatttcaaaggcctcggcacatcagagacgtggtcgtgcaggccgtgtg
caacctggagtttgttataggttgtatccgaaactaatacatgatgcaatgcctcaatat
caactacctgagattcttcgaacaccattacaggagctttgtctccaaattaagagcttg
cagtttggcgctattgaatcctttctggccaaggcacttcaacctccagatcctctctct
gtccacaatgccattgaacttctcaaaactattggagctctggatgatacagaagagctt
actcctcttggccgccatctttgcactctacctctggacccaaatattggaaagatgctt
ctgatggggtccatcttccaatgtctaaaccctgcactgactattgctgctgctcttgcg
caccgtgatccttttgtccttccaataaacaggaaagaggaagcagatgctgccaaaaga
tcatttgctggtgattcttgcagtgaccatattgcacttcttaaagcatttgaaggatgg
aaagatgctaaacattatagaaaagaaagagcattctgttgggaaaatttcttgtctcct
gtaacgttgcagatgttggaagacatgagaaatcagtttgtagacctactgtcagatatc
ggttttgtggataaatcacgaggagctaaggcatacaatgagtatagcaatgatttagag
atggtatgcgctatcctttgttcgggtctctacccaaatgttgtgcagtgtaaaagaaga
ggaaagcgtactgcattttacacgaaagaagttggaaaagttgatattcaccctgcatct
gttaatgctggtgttcatcttttccctcttccatacttggtttacagtgagaaagtcaag
actacaagcatttatatcagagattcaacaaacatatcagattatgctctccttatgttt
ggtggtaatctcagtccaagcaaaagtggagagggcattgaaatgctaggaggctatctt
cacttttctgcatcaaaaagtgtgttggatttgataaagaaactgcgaggggaactggat
aaaatcttaaaaaggaaaattgaagagcccggctttgacatttcggtcgagggaaagggt
gtagttggtgctgtggttgagttacttcatagtcaagacatacgatactaa
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