KEGG   Nicotiana attenuata (coyote tobacco): 109221558
Entry
109221558         CDS       T05870                                 
Name
(RefSeq) replication factor C subunit 3-like
  KO
K10756  replication factor C subunit 3/5
Organism
nau  Nicotiana attenuata (coyote tobacco)
Pathway
nau03030  DNA replication
nau03410  Base excision repair
nau03420  Nucleotide excision repair
nau03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:nau00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    109221558
   03410 Base excision repair
    109221558
   03420 Nucleotide excision repair
    109221558
   03430 Mismatch repair
    109221558
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:nau03032]
    109221558
   03036 Chromosome and associated proteins [BR:nau03036]
    109221558
   03400 DNA repair and recombination proteins [BR:nau03400]
    109221558
DNA replication proteins [BR:nau03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    109221558
  DNA Replication Termination Factors
   ELG1-RFC complex
    109221558
Chromosome and associated proteins [BR:nau03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    109221558
DNA repair and recombination proteins [BR:nau03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     109221558
  Check point factors
   HRAD17(Rad24)-RFC complex
    109221558
SSDB
Motif
Pfam: RCF1-5-like_lid DNA_pol3_delta2 AAA Rad17 AAA_lid_RFC1 Mg_chelatase Sigma54_activ_2 RuvB_N AAA_5 AAA_23 AAA_22 RsgA_GTPase ABC_tran nSTAND6 AAA_29 AAA_2 AAA_16 DUF815 AAA_24 PaRep2b T2SSE nSTAND3
Other DBs
NCBI-GeneID: 109221558
NCBI-ProteinID: XP_019241578
LinkDB
Position
Unknown
AA seq 279 aa
MLWVDKYRPKTLDKVIVHEDVAQNLQKLVLAGDCPHLLFYGPSGSGKKTLIMALLRQIFG
PSADKVKVENKIWKVDAGPRTIDVELTTLSSTNHVELSPSDAGFQDRYVVQEIIKEMAKN
RPIDTKGKKGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCSNSSSKVTEAVRSR
CLNVRINAPMEEEIVNVLDFIAKKEGLQLPQGFAARIAEKSNRNLRRAVLTFETCRVQQY
PFTNNQAIPPMDWEQYLSEIASDIMKEQSPKRYSCSPSK
NT seq 840 nt   +upstreamnt  +downstreamnt
atgttgtgggttgacaagtaccgccccaaaaccctagacaaagttattgtccacgaggat
gttgctcaaaatcttcaaaagctggtgttagcgggagattgtcctcatcttctcttttat
ggcccttccgggtcagggaagaaaactctgattatggcacttctgaggcagatttttggt
ccaagtgccgataaggttaaggttgagaacaagatttggaaagttgatgctggtccgagg
acaattgatgtggagctcacaacattatcaagcaccaaccatgtggaattgagtccaagt
gatgctggatttcaggatagatacgttgttcaagagataatcaaagaaatggccaagaat
agaccaattgacactaaaggaaagaaggggtttaaagtattagtgctaaatgaagttgac
aagctctcaagagaagcacaacattcacttcgaagaacaatggagaagtacagtgcctcg
tgccgcctaattctatgctccaacagttcttcaaaggttacagaagcagtccgctcacga
tgccttaatgtgagaataaatgcgccaatggaggaagagattgttaatgttttggatttt
attgccaaaaaggaaggacttcaacttccacaaggatttgctgctcgcattgcggaaaag
tccaataggaatctgaggagggcagtcttgacgtttgagacttgtcgtgttcaacagtat
cccttcacaaacaaccaagctatacctccaatggactgggagcaatatctttcagaaatt
gcatcagacataatgaaagagcagagccctaaaaggtacagctgcagtccatctaaatag

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