Nicotiana attenuata (coyote tobacco): 109223301
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Entry
109223301 CDS
T05870
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 37-like
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
nau
Nicotiana attenuata (coyote tobacco)
Brite
KEGG Orthology (KO) [BR:
nau00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nau03019
]
109223301
03041 Spliceosome [BR:
nau03041
]
109223301
03036 Chromosome and associated proteins [BR:
nau03036
]
109223301
Enzymes [BR:
nau01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
109223301
Messenger RNA biogenesis [BR:
nau03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
109223301
mRNA cycle factors
Common to processing body (P body) and stress granule
109223301
Spliceosome [BR:
nau03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
109223301
Chromosome and associated proteins [BR:
nau03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
109223301
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
Cas3-like_C_2
ResIII
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
109223301
NCBI-ProteinID:
XP_019243105
UniProt:
A0A1J6IJC4
LinkDB
All DBs
Position
3:10846754..10855892
Genome browser
AA seq
610 aa
AA seq
DB search
MRNSWADSVENTATDNVGPSGGSGASASTRRSSYVPPHLRNKPMGAEPPAPSPGGPPSGN
DRSGFNGPTSGSRWGGSRPDYGRQGYSGGGRSGGGWGGRGGGWGREREVNPFGNDADVDL
EQSFDQENTGINFDAYEDIPVETSGENVPPPVNTFAEIDLGEAVNLNIRRCKYVKPTPVQ
RYAIPISLAGRDLMACAQTGSGKTAAFCFPIISGIMRGDFSQRPRGVRTVFPLALILSPT
RELSMQIHEEAKKFSYQTGVRVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERAK
VSLQMIRYLALDEADRMLDMGFEPQIRRIVEQMDMPRPGERQTMLFSATFPKEIQRLASD
FLANYIFLAVGRVGSSTDLILQRVEYVHDGDKRSHLMDLLHAQMANGVHSKQALTLVFVE
TKKGADALEHWLCINGFPATAIHGDRTQQEREQALRTFKRGDTPILVATDVAARGLDIPH
VSHVINFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNEGNLSMAKPLADLMQEANQEVPE
WLTRYASRSYGGGRNKRSGGGRFGGRDFRRDSSYSRSGGGGVSYYDGGNSSGGYGNYSGG
YGPGVTSAWD
NT seq
1833 nt
NT seq
+upstream
nt +downstream
nt
atgaggaactcgtgggcagattctgttgagaatacagctactgataatgttgggcctagc
ggtgggagtggagcttctgcttctacaaggagatcatcttatgtcccaccacatcttcgc
aacaaaccaatgggagcggagcctccagctccatcaccgggtggtccaccgtctggtaat
gaccgttcaggattcaatggaccaactagtgggtctcgatggggtggttctaggccagat
tacggacgccaaggttatagtggtggcggccgcagcggaggtggttggggtggcagaggc
ggtggttggggtagagagcgggaagtgaatccttttggtaatgatgcagatgtggacttg
gagcaatcatttgatcaggagaatactggtatcaattttgatgcttatgaggatattcca
gtggaaacaagtggagaaaatgtgccacctcctgttaacacatttgcagagatagattta
ggggaggccgtcaacttgaatattaggaggtgcaaatatgttaagccgactcctgtccag
cgttatgcaattcccatctccttagcagggcgagatctcatggcctgtgcccagactgga
tccggcaagacagctgcattttgtttccctattattagtggaatcatgaggggggatttt
tcgcaacggcctcgtggggtgcggacagtgtttccccttgctcttattctctcaccaaca
agagagctctcaatgcagatacatgaggaagctaaaaaattttcatatcagactggtgtt
agagtggtcgtggcctacggtggagccccaattaatcaacagctccgagagcttgagaga
ggagttgatattcttgtggcaactcctggaagactggttgatttacttgagagagcaaaa
gtttcattacagatgattagatatttagctcttgatgaggcagatcgtatgctggacatg
ggattcgaacctcaaatcagaaggatagtggagcaaatggatatgcctcgacctggtgaa
aggcagactatgctgttcagtgccacattcccaaaggagattcagagactggcatctgat
tttcttgcaaactacatatttttggcagttggacgggttggttcgagtaccgatttgatt
cttcagcgagttgaatatgttcatgatggtgataagagaagccatcttatggacctactt
catgcacagatggctaatggggttcatagcaagcaagctctaactttggtatttgtcgaa
acaaagaagggtgctgatgcattggagcattggctgtgtatcaatgggtttcctgcaact
gccattcatggtgataggactcagcaggaaagggagcaagcgttaagaacattcaagaga
ggggataccccaattttagttgcgacagatgtggctgcccgaggccttgatatccctcat
gtttctcatgttatcaactttgaccttcctaatgacattgacgattatgtgcaccgaata
ggcaggacaggtcgtgcaggcaagtcaggattagcaactgctttctttaatgaaggtaat
ctttcaatggctaagcccctagctgacctgatgcaagaagctaatcaggaggtacctgaa
tggctgactcgttatgctagccgttcatacggaggaggtagaaacaagcggtctggtgga
ggccgttttggtgggcgtgacttcaggagggattcctcttacagtagaagtggtggaggt
ggtgtgagttactatgatggaggtaacagcagtggtggttatggcaattatagcggggga
tatggtcctggagtaactagtgcttgggactag
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