Nicotiana attenuata (coyote tobacco): 109223334
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Entry
109223334 CDS
T05870
Name
(RefSeq) CCR4-NOT transcription complex subunit 3 isoform X1
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
nau
Nicotiana attenuata (coyote tobacco)
Pathway
nau03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nau00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109223334
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nau03019
]
109223334
Messenger RNA biogenesis [BR:
nau03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
109223334
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
109223334
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
DUF5965
Motif
Other DBs
NCBI-GeneID:
109223334
NCBI-ProteinID:
XP_019243138
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All DBs
Position
3:14903085..14948361
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AA seq
853 aa
AA seq
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MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRD
QIKTWIQSSEIKDKKVSASYEQALMDARKLIEREMERFKICEKETKTKAFSKEGLGQQPK
TDPREKAKSETRDWLNNTVGELENQIDTFEAELEGLSVKKGKQRPPRLVHLETSIVRHKA
HIMKLELILRLLDNDELSPEQVNDVKDFLDDYVERNQEDFDEFSDVDELYSTLPLDKVES
LEDLVTVGPPGLVKGVTVASAVLSVKNSLASSPAQSSVSVTSSAQQVACVQDQADETASQ
DSSSEAVARTPPPKSSAVAASAPTTPAGSHATQGAVAALSPTSMSNAIKEDDVTSFPGRK
PSPALNETALRGVNRGSLSNQPVASITLGSGGAATGNGGLGAVPSASEVTKRNTLGSEDR
LGSSAMGQALVSPLANRMMMSQAAKATDGIGVADGANPGDATMTGRVFSPSVGPGMQWRP
GSSFQNQNEAGQFRGRTEIAPDQREKFLQRFQQVQQQGQSNLLGIPPLSGGNLKQFSSQQ
QNPLLPQFNSQSSSVSPQLGLGVGVQASSINSVASSASLQQQPDAGHSKVEDLQQQQTLP
EDSSADSAANPGPGKNLLNEDDMKASYGLDNPMQGGVNGSIAEPSPRPRDIDLSPGQPLQ
SSQPSGSLGVIGRRSVADLGAIGDNLSASTANSGGMHDQLYNLQMLESAFYKLPQPKDSE
RAKSYTPRHPAVTPPSYPQVQAPIVNNPAFWERLGADNYGTDTLFFAFYYQQNTYQQYLA
AKELKKQSWRYHRKYNTWFQRHEEPTVATDDFEQGTYVYFDFHIANDEQHGWCQRIKQEF
TFEYNYLEDELIV
NT seq
2562 nt
NT seq
+upstream
nt +downstream
nt
atgggagcgagtcgaaagctacagggtgaaatcgatcgagttctgaagaaagttcaagaa
ggcgttgatgtcttcgatagcatatggaacaaggtttacgacacggataatgcgaaccag
aaggaaaaatttgaagcggatttgaaaaaggagatcaaaaagcttcagaggtatagagac
caaatcaaaacatggattcaatcaagtgaaatcaaagataaaaaggtaagtgcctcgtat
gaacaagcattaatggatgctcgtaagcttattgagcgtgaaatggagcgattcaaaata
tgtgagaaagaaactaagaccaaagcattttcaaaagaaggtttgggtcaacaacctaag
acggacccaagggagaaggccaaatcagagacacgagattggttgaataatacggttggg
gagctcgaaaatcaaatcgacactttcgaggctgaattggaaggactctcagttaaaaaa
gggaagcaaaggcccccaagattggtacatttggaaacatccattgttcgacacaaggct
cacataatgaaattagagttgatattaagactactggataatgatgaattgagtcctgaa
caagtcaatgatgtcaaggatttccttgacgattatgtggaacgtaatcaggaggacttt
gatgaattcagtgatgttgatgagctttatagcactttgccgctagataaggtggagtct
cttgaagatctggttactgtcggtccacctggtcttgttaagggtgtcactgttgccagt
gctgttttgagtgtgaaaaattctctggcctcttcccctgctcaatcatcggtgtctgta
acatcttcagcacagcaagttgcttgtgttcaggatcaggctgatgaaacagcatcacag
gacagtagctctgaagcagttgcaaggaccccacctcctaaaagtagtgcagttgctgct
tctgctcccacaacacccgctggcagtcatgcaacacagggtgctgttgctgctttatct
ccaactagcatgtctaatgcgataaaagaagatgatgtgacaagcttccctggtcgaaag
ccttcccctgctcttaatgaaactgctttaaggggtgtcaatagaggttcgctatctaac
caacccgtggctagtattacacttggttctggtggtgcagctactgggaatggaggtcta
ggagctgttccttcagcttctgaagtcacgaagagaaataccttaggttccgaggatagg
cttggaagtagtgccatgggtcaggctttggtatcccctctggctaacagaatgatgatg
tcacaagcagctaaggctacagatggaattggtgttgctgatggggcaaatcctggtgat
gctacgatgactggtagggttttctctccttctgttggtcctggtatgcaatggaggcct
ggcagttcctttcagaatcaaaatgaagcgggccaattccgtggaagaacagaaattgca
cctgaccagagggagaagttcttgcaacgatttcagcaagtacaacagcagggtcagagt
aatcttcttggtatacctccacttagtggaggaaaccttaagcagttctcgtcccaacaa
cagaatccacttctgccacagttcaattctcaaagctcctctgtctctcctcaacttgga
ctgggagttggagtccaagcatctagtattaacagtgttgcctcgtctgcatctttgcag
caacagccagatgcaggccactcaaaagttgaagacttgcagcaacaacagactttgcct
gaagattcttctgcagattctgctgcaaatcctgggcccgggaaaaatcttttgaatgag
gatgatatgaaggcttcatatggactagataacccaatgcagggaggagtcaatggctct
attgctgaaccatccccaagaccaagggatatagatttatctcctgggcaacctttgcaa
tccagtcagccatctggaagtcttggggttattggtcgaaggagtgttgctgaccttgga
gcaattggtgataacctgagtgcatccactgcaaattctggaggaatgcatgaccaatta
tacaacttgcagatgcttgaatctgccttttacaaacttcctcaacccaaagattctgaa
cgtgcaaagagctatacaccgaggcaccctgcagttacccctccaagctatccccaagta
caggctcccattgtcaacaatcctgccttctgggaaagacttggagctgataactatggc
actgacactctgttctttgcattttactaccaacagaatacttatcagcagtatctggct
gctaaggagttgaagaaacagtcttggaggtatcacagaaaatataacacatggtttcag
cggcatgaggagcctactgttgcgactgatgacttcgaacaggggacatatgtgtacttt
gatttccacattgccaatgatgagcaacatggatggtgccagaggatcaagcaggagttc
acatttgagtacaattatcttgaagatgagctcattgtataa
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