Nicotiana attenuata (coyote tobacco): 109223459
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Entry
109223459 CDS
T05870
Name
(RefSeq) sm-like protein LSM2
KO
K12621
U6 snRNA-associated Sm-like protein LSm2
Organism
nau
Nicotiana attenuata (coyote tobacco)
Pathway
nau03018
RNA degradation
nau03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
nau00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109223459
09123 Folding, sorting and degradation
03018 RNA degradation
109223459
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nau03019
]
109223459
03041 Spliceosome [BR:
nau03041
]
109223459
Messenger RNA biogenesis [BR:
nau03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
109223459
mRNA degradation factors
5'-3' decay
Lsm complex
109223459
Spliceosome [BR:
nau03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
109223459
Complex C
U2 snRNP components
109223459
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SM-ATX
DUF150_C
Motif
Other DBs
NCBI-GeneID:
109223459
NCBI-ProteinID:
XP_019243322
UniProt:
A0A1J6II95
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Position
3:complement(29681536..29685999)
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AA seq
93 aa
AA seq
DB search
MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTKVVDQDKFPHMLSVRNC
FIRGSVVRYVQLPPEGVDIELLHDATRREARGG
NT seq
282 nt
NT seq
+upstream
nt +downstream
nt
atgttgtttttttcatacttcaaggacctggtgggcagagaagtgacagtggaactgaag
aatgatttggctatccgaggcacgctccattcagttgatcagtatctcaacattaagctc
gaaaacacaaaggtcgtcgatcaagacaagttccctcacatgctttcagtgaggaactgc
ttcatcagaggatcggtggtgagatatgtccagttacctcccgagggagttgacattgag
ctgcttcatgatgctacaaggagagaagctcgaggtggctga
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