KEGG   Nicotiana attenuata (coyote tobacco): 109223459
Entry
109223459         CDS       T05870                                 
Name
(RefSeq) sm-like protein LSM2
  KO
K12621  U6 snRNA-associated Sm-like protein LSm2
Organism
nau  Nicotiana attenuata (coyote tobacco)
Pathway
nau03018  RNA degradation
nau03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:nau00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    109223459
  09123 Folding, sorting and degradation
   03018 RNA degradation
    109223459
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:nau03019]
    109223459
   03041 Spliceosome [BR:nau03041]
    109223459
Messenger RNA biogenesis [BR:nau03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     109223459
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     109223459
Spliceosome [BR:nau03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    109223459
 Complex C
  U2 snRNP components
    109223459
SSDB
Motif
Pfam: LSM SM-ATX DUF150_C
Other DBs
NCBI-GeneID: 109223459
NCBI-ProteinID: XP_019243322
UniProt: A0A1J6II95
LinkDB
Position
3:complement(29681536..29685999)
AA seq 93 aa
MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTKVVDQDKFPHMLSVRNC
FIRGSVVRYVQLPPEGVDIELLHDATRREARGG
NT seq 282 nt   +upstreamnt  +downstreamnt
atgttgtttttttcatacttcaaggacctggtgggcagagaagtgacagtggaactgaag
aatgatttggctatccgaggcacgctccattcagttgatcagtatctcaacattaagctc
gaaaacacaaaggtcgtcgatcaagacaagttccctcacatgctttcagtgaggaactgc
ttcatcagaggatcggtggtgagatatgtccagttacctcccgagggagttgacattgag
ctgcttcatgatgctacaaggagagaagctcgaggtggctga

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