KEGG   Nicotiana attenuata (coyote tobacco): 109223681
Entry
109223681         CDS       T05870                                 
Name
(RefSeq) histone deacetylase 6-like
  KO
K06067  histone deacetylase 1/2 [EC:3.5.1.98]
Organism
nau  Nicotiana attenuata (coyote tobacco)
Pathway
nau03082  ATP-dependent chromatin remodeling
nau03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:nau00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    109223681
   03083 Polycomb repressive complex
    109223681
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:nau03036]
    109223681
Enzymes [BR:nau01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     109223681
Chromosome and associated proteins [BR:nau03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class I HDACs
     109223681
   HDAC complexes
    Sin3A-HDAC complex
     109223681
    BRAF-HDAC complex
     109223681
    REST complex
     109223681
    SHIP complex
     109223681
    MiDAC complex
     109223681
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     109223681
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    109223681
  Chromatin remodeling factors
   NuRD complex
    109223681
SSDB
Motif
Pfam: Hist_deacetyl
Other DBs
NCBI-GeneID: 109223681
NCBI-ProteinID: XP_019243621
UniProt: A0A1J6IID4
LinkDB
Position
3:complement(47400727..47404042)
AA seq 434 aa
MDSSISTVEGGASLPSTGTDATKRRVSYFYDPYIGDYYYGLGHPMKPHRIRITQNLVCHY
NLHRRMEITRPFPASADDIRWFHSPDYVDFLSSVSPETLYYQTHDDHDLKRFNLREDCPV
FDGLFGFCQASAGGSIGAAVKLNRQDADIAINWAGGLHHAKRTGASGFCYVNDIVLGILE
LLKVHKRVLYIDIDVHHGDGVEEAFYTTDRIMTVSFHKFGDFFPGTGHIKDIGAGSGKYY
ALNAPLNDGIDDESFRRLFRPIIQKVMEVYQPEAVVLQCGADSLSGDRLGLFNLSVKGHA
DCLRFLRSFNVPLMVLGGGGYTIRNVARCWAYETAVAVGVELENKLPYNDYYEYFGPDYT
LHVEPIPMENKNLPRDLEKIRNMLLEQLSRLPHAPSVPFQMAPSITEVPEEREEDMDQRP
KPRIWIKEEYESYC
NT seq 1305 nt   +upstreamnt  +downstreamnt
atggactcttccatttccaccgtggagggcggcgcgtcgcttccttcgacggggactgac
gcgacaaaacgccgtgtttcttatttctacgacccttatatcggcgactattactacggc
ctgggccacccaatgaagcctcaccgtattcgcattacccaaaaccttgtttgccactat
aaccttcatcggcgaatggagatcactcgcccattcccggcgagtgcggacgatattcgt
tggttccactcgccggactacgtcgactttctctcttccgtttcaccggagactctttac
taccagacacatgacgaccacgaccttaaacgcttcaacctcagagaagattgccctgtt
tttgatggactttttggtttttgtcaagcttctgccggtggttccattggcgccgccgtt
aagcttaatagacaagatgctgacatagctatcaattgggctgggggattgcaccatgca
aagagaactggggcttccggattttgctatgttaatgatattgttcttggaattcttgaa
cttctcaaggtccacaagcgtgtgttgtatatagatatcgatgttcaccacggagacgga
gttgaggaggctttttataccacggatcggattatgacagtgtcttttcataagtttggg
gacttctttcctggtacaggacatataaaagacattggtgcaggttctgggaagtactat
gccttaaacgctcctttgaatgatgggattgatgatgaaagttttcgtcgtctattccgt
cccataatccaaaaagtaatggaggtctaccaacctgaagctgtggttcttcaatgtggt
gctgattcactatctggagacaggttgggccttttcaacttgtctgtcaaaggccatgcc
gattgccttcgattcctcaggtctttcaatgttcctctaatggtattgggtggtggaggt
tatacaattcggaatgttgcccgctgctgggcctatgagacagcagttgcagttggagta
gagcttgagaataaattgccttacaatgactattatgagtatttcggcccagattatact
cttcatgttgaaccaatacccatggagaataagaatttgccccgggatttggagaagatc
aggaacatgttgctggagcaactttcgcgattaccccatgcacctagtgtgccattccaa
atggcaccttctattacagaagttcctgaagagagagaggaagacatggatcaaaggcca
aaaccacggatatggattaaagaggaatatgagtcttattgctga

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