Nicotiana attenuata (coyote tobacco): 109223685
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Entry
109223685 CDS
T05870
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 20
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
nau
Nicotiana attenuata (coyote tobacco)
Pathway
nau03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
nau00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109223685
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
nau03041
]
109223685
03009 Ribosome biogenesis [BR:
nau03009
]
109223685
Enzymes [BR:
nau01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
109223685
Spliceosome [BR:
nau03041
]
Complex A
U1 snRNP components
U1 related factors
109223685
Complex B
109223685
Ribosome biogenesis [BR:
nau03009
]
Eukaryotic type
Pre-60S particles
Helicases
109223685
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
109223685
NCBI-ProteinID:
XP_019243627
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All DBs
Position
3:47560555..47566274
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AA seq
610 aa
AA seq
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MPGGAAASYGRGEPLPYGGPQAPPMDSGARGGSGIGRSGPVGGGFNGYSPFEGGFSRGAG
MGRDSGFGGDRVANGGMGDRPGRFGAGSNNTGSRSGGRGGRDFDGGYSGGRGGGRFSSDG
GRGGRGGGRHGSSRDDLDNLTLPKADFGNLVPFEKNFYVEHHSVRAMTEEDVALYRARRE
ITVEGHDVPRPIQMFHEANFPDYCLEVISRLGFVEPTPIQSQGWPMALKGRDLIGIAETG
SGKTLAYLLPALVHVRAQRLAHGDGPIVLVLAPTRELAVQIQKEAVKFGSRANISSTCIY
GGAPKGPQIRDLKRGVEIVIATPGRLIDMLEAQHTNLKRVTYLVLDEADRMLDMGFEPQI
RKIISQIRPDRQTLYWSATWPKEVESLARQFLRNPYKVIIGSPDLKANQSIRQIVEVVTD
LEKYRRLIGLLKEMMDGSRILIFVETKKGCDQVTRQLRMDGWPALSIHGDKSQDERDWVL
AEFKNGRSPIMIATDVAARGLDVKDIKCVVNYDFPSSLEDYIHRIGRTGRAGATGTAFTF
FTHANAKYTRQLIKILQQAGQIVPPQLSALAGSTAHSTGGSNFRSRGRGGFGNRDQKSGS
NVIPLGRRPW
NT seq
1833 nt
NT seq
+upstream
nt +downstream
nt
atgcctggtggagctgcggctagctacggtcgtggtgagccccttccttatggcggtcct
caagcaccgcctatggactctggtgctagagggggtagtggaataggtagatctggacct
gttggtggcgggttcaatgggtattcaccttttgaaggtggtttttcaagaggggctggt
atgggccgggacagtggctttggaggtgacagagtggctaacggtggtatgggagaccgg
cctgggcgatttggtgcggggtcaaacaacactggaagtaggagtggtgggagaggaggt
agggattttgatggaggctacagtggtggacgtggaggtggaaggtttagttcggatgga
ggccgtggtgggagaggaggaggtaggcatgggagctcgcgagatgatctagacaacctt
actcttccaaaggcagacttcggaaacttggtacccttcgagaagaatttttatgttgaa
catcactctgtgagggcaatgactgaagaggatgttgctctttatcgtgcacggcgtgag
attactgttgaaggccatgatgtccctaggccaattcagatgttccatgaggcaaacttt
cctgattattgcctcgaggttatttcaagattaggatttgttgagccaacacctatccaa
tcacaaggatggccaatggctttaaagggcagagacttaatagggattgctgaaactggt
tctgggaagactttggcatatctattgccggctttggtccatgtccgcgcacaacggttg
gctcatggtgatggcccaatcgtgctagtattagcacctacgagagaattggctgttcag
attcaaaaagaagctgtcaaatttggatcgcgtgccaacattagcagtacttgcatttat
ggtggtgccccaaaaggacctcaaatccgtgatcttaaaagaggagttgaaattgtgatt
gcaacccctggtcggttaatagatatgctggaagctcaacatacaaacttgaaaagagtg
acttatctcgtactggacgaggctgatcgaatgctggatatggggtttgagcctcaaatc
aggaaaataatttcccagattagaccagatagacaaaccttgtattggagtgcgacttgg
cccaaagaggttgaaagcctggctaggcagtttctacgcaatccctataaggtcatcatt
gggtctccagacttgaaagcaaatcaatccataaggcaaatcgttgaagttgtcacagat
ttagagaagtatagaaggttgattgggcttttgaaagaaatgatggatggaagcagaatc
ctaatatttgtagaaacaaagaaaggatgtgatcaagtgacaagacagttgagaatggat
ggatggccagctttatccatccatggcgataaaagccaggatgagagggattgggtcctg
gctgaattcaaaaatggcagaagtcccataatgattgccactgatgttgctgcacgtggt
cttgatgttaaggacataaagtgtgttgtcaactatgatttcccttcaagtcttgaggat
tatattcataggattggcagaactggacgtgcaggtgccacgggaactgcatttacattt
ttcacccatgcaaatgccaagtatacccgacagcttattaagatccttcagcaggcaggg
caaattgttccacctcaactttctgcattggcagggtctactgctcacagcactggaggg
agcaatttccggtctagaggacgaggtggctttggaaaccgggaccagaagtctggatcc
aacgtaattcctcttggtagaaggccttggtag
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