Nicotiana attenuata (coyote tobacco): 109224085
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Entry
109224085 CDS
T05870
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
nau
Nicotiana attenuata (coyote tobacco)
Pathway
nau03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nau00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109224085
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nau03019
]
109224085
03012 Translation factors [BR:
nau03012
]
109224085
Enzymes [BR:
nau01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
109224085
Messenger RNA biogenesis [BR:
nau03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
109224085
Translation factors [BR:
nau03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
109224085
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
dsrm
DEAD
HA2_N
AAA_22
nSTAND3
AAA_19
NACHT
T2SSE
AAA_30
AAA_16
ATPase
PhoH
Dicer_dimer
Motif
Other DBs
NCBI-GeneID:
109224085
NCBI-ProteinID:
XP_019244200
UniProt:
A0A1J6IXT6
LinkDB
All DBs
Position
3:71749216..71762176
Genome browser
AA seq
1180 aa
AA seq
DB search
MPMPYTNLIQNCLKVRLKATQFLTTMSSSTTTSLQFCFHFNTAPLLHCPSQVRFICSAKG
SSNSSVVLRRKRNGSPSSSFSFPYFYQQNLGYGRFAYDEYESESESDRETESSKQLCDGT
LHNIEEWRWKLNMLMRKKDDQEVISREKKDRRDFEHISALATRMGLHCRQYEKAVVFSKV
PLPNYRPDLDAKRPQREVVLPYGLQNRVDDLLKAHLSKKSGNKENFAHNASPNDKEFYEN
EKPFARNVVAEQILRRRSLEMRNRQEDWKGSPEGQKMQEIRRNLPAYKERETLLRAISEN
QVVVVSGETGCGKTTQLPQYILEAEIEAARGATCNIICTQPRRISAMAVSERVAAERGES
LGESVGYKVRLEGMKGRDTRLLFCTTGILLRRLLVDRNLGGVTHVIVDEIHERGMNEDFL
LIVLKDLLPRRPELRLILMSATLNAELFSSYFGGAPMIHIPGFTYPVRSHFLENILEITR
YRLTPYNQIDNYGQDKMWKMQKQTDRKRKTQIASAVEESLEAADFGQYNPRTRDSLSCWN
PDSIGFNLIEHVLCHICKNERPGAVLVFMTGWDDINALKDQLQAHPLLGDPSRVLLLACH
GSMASAEQKLIFDKPEDGIRKIVLATNMAETSITINDVVFVVDCGKAKETSYDALNNTPC
LLPSWISKASARQRRGRAGRVQPGECYHLYPRCVFEAFADYQLPELLRTPLQSLCLQIKS
LQLGSISEFLSKALQPPEPLSVQNAVEFLKTIGALDENENLTVLGQHLSMLPVEPKLGKM
IILGAVFNCLDPIMTVVAGLSVRDPFLMPFDKKDLAESAKAQFSARDFSDHLALVRAYDG
WRNAERQQSGYEYCWKNFLSAQTLKAMDSLRKQFLHLLKEIGLVDSFQSCNAWSNDEHLV
RAIICGGLFPGICSVVNKERSISLKTMEDGGVLLYSNSVNAQELQIPYPWLVFNEKVKVN
AVFLRDSTAVSDSVLLLFGGSIFGRALDGYLMMLGGYLEFFMSPSLANTYLSLKRELNEL
VHKKLLDRNFDVGSHGELLEAVRLLVSEDQCEGKFVFGRKPSPKKSAKELQKSISSTKGT
GGENPKSHLQTLLVRAGHQSPNYKTTQLKNNKFRSTVIFNGLNFAGQPCGNKKDAEKDAA
AEALQWLTGETQSSSKAVEHMSALLKKSKSKKQLHSTKWR
NT seq
3543 nt
NT seq
+upstream
nt +downstream
nt
atgcccatgccttacactaaccttattcaaaattgcctcaaggtgaggctcaaagccact
caattcctcaccactatgtcttcctctaccaccacttctctacaattttgtttccacttt
aacacagcccctcttcttcactgcccgtcacaagttagattcatttgctcagccaagggc
tcttctaattcgtctgttgtattaaggcggaaaagaaatggttcaccatcctcttctttt
tcttttccgtatttttatcagcagaatttagggtatggtcgttttgcttatgatgagtat
gagtctgagtccgagtctgatcgtgaaactgagtcgtctaagcaactgtgtgatggaacc
cttcataatattgaggaatggaggtggaagctaaacatgttaatgcgcaaaaaagatgac
caagaagtgatctcaagggagaaaaaggaccgtcgggattttgagcatatatcagctctg
gcaactagaatgggtttacattgccgccagtatgaaaaagcagttgtgtttagcaaggtc
ccattgccgaattataggccggatttggatgctaagcgtccacagagagaggtagtattg
ccttatggattacaaaacagggtagacgatcttcttaaagcacatctttctaaaaagtcc
ggaaacaaggaaaactttgcacataatgcttctcccaatgataaagagttttatgagaat
gagaagccatttgcacgaaatgttgttgcagagcaaattctcaggcgaaggagcttggag
atgcgtaacagacaagaagattggaagggatctccagaaggccagaagatgcaagaaatt
cgaagaaatctcccagcatataaagagagagagacattgcttagagctatttctgagaat
caggtagtggtcgtgtctggggaaactggatgtggtaagactacccaattgcctcagtac
attttagaagctgagatagaagctgctcgtggagctacttgtaatattatttgtactcaa
ccaaggcggatatctgctatggctgtgtctgaaagagttgctgcagagcgtggggagagt
ctgggagaatctgtgggctacaaggttcggcttgagggcatgaaagggagggatacacgc
ctcttattttgcaccactggcattcttctgaggagattactggttgatagaaatttggga
ggtgtcactcacgttattgtagatgagattcatgaacggggaatgaatgaagatttccta
ttgattgtccttaaagatctccttccccgtcgaccggaattgaggctgatcttgatgagt
gctactcttaacgctgagctcttctcttcctattttggcggcgctccaatgatccatatt
cctggttttacttatccagtccgaagtcattttctggaaaatattttggaaataactaga
tatcggttaactccatataatcaaattgataattatggtcaagacaagatgtggaaaatg
cagaagcagactgataggaagaggaagactcaaattgcttcagctgttgaggaatcacta
gaagcagctgattttgggcagtataatcctcgtactcgggattcactatcctgttggaat
cctgattcaataggcttcaacctcattgagcatgtgctttgccacatatgtaaaaacgaa
aggccaggtgctgttttggttttcatgacaggttgggatgacattaatgctttgaaggat
cagctgcaggctcatcctctattgggagatccaagcagagtattgctgcttgcatgccat
ggttccatggccagtgcggagcagaaattgatttttgataagccagaagatggaataagg
aaaattgtattagctaccaacatggctgaaacaagtatcaccatcaatgatgtggttttt
gtggtcgactgtggaaaggcaaaagagacatcttatgatgcactcaacaacactccatgt
ttacttccttcttggatttcaaaagcttctgctcgtcaaagaagaggaagagctggccgt
gttcaacctggggagtgttatcatctctatcctagatgtgtatttgaagcttttgcagat
tatcaactgccggagcttctgaggacaccattacaatccctttgtttgcagattaaaagc
ttacaacttggaagtatttcagaatttctatctaaggcattgcagccaccagaaccacta
tctgttcaaaatgctgttgagtttctgaagacaataggggctctagatgagaatgaaaat
ctgacagtacttggacaacacttatcaatgcttccagttgaaccaaaactgggaaaaatg
ataatattaggtgcagtattcaactgcctggatccaatcatgacagttgttgctggttta
agtgttagagacccatttttaatgccatttgacaaaaaggatctggctgagtctgccaaa
gcccagttttctgctcgtgacttcagtgatcatcttgctcttgttcgggcttatgatggc
tggagaaacgctgaaaggcagcaatctggttatgagtactgttggaaaaatttcctttct
gcgcaaactctcaaagcgatggactcccttcgaaagcaatttttgcatctccttaaggaa
attggtttagttgatagctttcagagttgtaatgcctggagtaatgatgaacatcttgtt
cgagcaattatatgtggtgggttattccctggcatatgctctgttgtgaacaaggagagg
tcaatctcactgaaaacaatggaggatggtggagtccttttgtactctaattctgttaat
gcccaagagctgcaaatcccatatccatggcttgtcttcaatgaaaaagttaaagtgaat
gcagtattcctgcgtgattctactgctgtatctgactctgtcctactcttgtttggcgga
agcatttttggacgagctctagatggatacttgatgatgcttggagggtacttggagttt
ttcatgagcccctcactggcaaatacttatttaagcttgaagagggagctcaatgaactt
gtccataagaaacttttggaccgtaattttgatgtaggcagtcatggtgagctattagaa
gctgttagattgctggtgtcggaggatcaatgtgaaggtaagtttgtctttggtcgtaaa
ccgtccccaaagaagtctgcaaaggagttgcaaaaaagcatcagttcaacaaagggcact
ggtggtgaaaatcctaagtctcatctccagacattgcttgttcgggctggtcaccaatca
cccaattacaagactactcaattaaaaaataataagttccgctccactgtaatattcaat
gggttgaactttgccggtcagccttgcggcaataagaaggacgctgaaaaagacgcagct
gctgaagctctgcagtggttgactggtgagacacagtcgtcttctaaggctgttgaacac
atgtcagcacttctgaagaaaagcaagagtaaaaagcaacttcatagtacgaaatggagg
tag
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