Nicotiana attenuata (coyote tobacco): 109224104
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Entry
109224104 CDS
T05870
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit A-like isoform X1
KO
K07466
replication factor A1
Organism
nau
Nicotiana attenuata (coyote tobacco)
Pathway
nau03030
DNA replication
nau03420
Nucleotide excision repair
nau03430
Mismatch repair
nau03440
Homologous recombination
nau03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
nau00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
109224104
03420 Nucleotide excision repair
109224104
03430 Mismatch repair
109224104
03440 Homologous recombination
109224104
03460 Fanconi anemia pathway
109224104
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
nau03000
]
109224104
03032 DNA replication proteins [BR:
nau03032
]
109224104
03400 DNA repair and recombination proteins [BR:
nau03400
]
109224104
Transcription factors [BR:
nau03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
109224104
DNA replication proteins [BR:
nau03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
109224104
DNA repair and recombination proteins [BR:
nau03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
109224104
MMR (mismatch excision repair)
109224104
DSBR (double strand breaks repair)
HR (homologous recombination)
109224104
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
zf-CCHC
tRNA_anti-codon
zf-CCHC_3
DUF223
DUF936
zf-CCHC_5
Motif
Other DBs
NCBI-GeneID:
109224104
NCBI-ProteinID:
XP_019244234
UniProt:
A0A1J6IJT4
LinkDB
All DBs
Position
3:72364299..72368416
Genome browser
AA seq
908 aa
AA seq
DB search
MPPINLTEGAIAILTNGEAHSEDFKPVLQITDIRLVNTQNQNNNNERYRILLSDGEFLQQ
GMLATQKNDLIRSQQIQKGSIIQMNQFVCNNIQNRMIIIVIELDILHETCDTIGEPKHYL
PNGISPSVPRPAAPLQPSTNQSGGLSGSPQSFTAVSATSSSAPRPNMPGGMRSPESNHSI
GYNTSSAGNIDSGRYSSTSAPLYPKAESGPAISRAPTNNYVRPPQPSYQQHPQSSYQQPP
PLYSNRGPIAKNEAPPRIVPIAALNPYQGRWTIKARVTAKAELRHYNNQRGDGKVFSFDL
IDSDGGEIRVTCFNSVADQFYGQIEPGRVYLISKGSLRPAQKAYNHLPNDHEIMLESTSV
VQPCFEDDRTIPQQQFHFRPISDIEALENNSVVDVIGVVSSISPSSSIMRKNGTETQRRV
LQLKDMSGKSVELTLWGNFCNAEGQTLQSMCDSGASPVLAVKAGRVNDFNGKSVSTISTS
KLFTEPDFPEALKLKAWFEREGKNTPSVSLSREVSSIGRTDVRKTISQIKDERLGTSEKP
DWITISATVTFIKGENFCYPACPLMIGDRQCNKKVTNNGDGKWRCDRCDQTVDECEYRYI
LQFQIQDHTGLTWVTAFQECGDQIMGVSAKELYFLKYEGQDDDRFTDIMRNVLFNKFIFK
LKVKEEMFSDEQRVKSTVVKAEKLNFQSEIRFLLDLIDKNNGLESSTLPPKTDDTTPTSG
YGNAGFGSRTIEPMNPVANYGGSNSSISRESGLQGNQQGQYGNKFTGSQFAPPGSTGMYM
SCNSCGGTGHSASNCPSIMSGQGQAYGGGFGNRGTSGMSSDGASGECYKCHQFGHWARDC
PGVSNAPPANNMTPASGMSSGGASGECYKCHQFGHWARDCPGVSSAPAANNMTPGRYGNP
PRQRVGGF
NT seq
2727 nt
NT seq
+upstream
nt +downstream
nt
atgccgccgataaacttgacggaaggtgcgatagcgattttaacgaacggcgaagcacat
tcggaggattttaaaccggtgttacaaatcacggatattcggttagtgaacactcagaat
caaaataacaataacgaacgctaccggattcttttatcggacggggagtttcttcagcaa
gggatgttagctactcaaaaaaacgatcttattcggtctcaacagattcaaaaaggatct
attattcagatgaatcagttcgtttgtaataacatccaaaatcgaatgatcatcatcgtc
attgaattagatattttacatgagacatgtgataccattggagaaccaaagcattatctc
ccaaatggtattagtccttcagtgcctcggccagctgccccacttcagccttccaccaat
caatcaggtggtttaagtggcagccctcaatcctttactgctgtttcagctacttcaagc
tcagctccaagaccaaatatgcctggagggatgcgatctcctgagtcaaaccatagcatt
ggttataatacttcctctgctggtaatattgactctggaagatatagttcaacaagtgca
cccctttaccccaaagcagaatctggtccagcgatttcacgggctccgacgaataattat
gtgcggccacctcagccttcttatcagcagcatcctcagtcttcttatcagcagccacca
ccgttgtactcaaacagaggacctatagccaagaacgaagcaccgccgaggattgttcca
attgctgctctcaatccatatcagggtcgatggactatcaaggccagggttactgctaag
gcagaactcagacactacaacaatcaaaggggtgatggaaaagtattctcttttgatctt
attgattctgatggaggagaaataagagtaacatgctttaactctgtagctgaccaattt
tacggccagattgagccaggtagagtgtatttgatttccaagggtagcttgagaccagct
cagaaagcttacaatcaccttccaaatgaccatgaaattatgctcgagagcacatcagtg
gttcaaccttgttttgaggatgacaggactattcctcagcaacaatttcattttcggcca
atcagtgatattgaggccttggagaacaatagtgtggtagatgtgattggtgtggtgtct
tcaataagtccatctagctcaataatgaggaaaaatggtacagaaactcagagaagagtt
ctccagctgaaggatatgtctggcaaaagtgttgaattaactttgtggggaaatttctgc
aatgcagaaggtcaaacacttcaaagtatgtgtgattctggagcttcccctgttttggca
gtcaaagctggtagagtaaatgattttaatggcaaatctgtaagtactatatctacaagc
aagttgtttacagaaccagattttcctgaagctctaaaactgaaggcatggtttgagagg
gagggaaagaacacgccatcagtatctctttcccgagaagtgagcagcattggtcggaca
gatgtgcgaaaaactatatctcaaatcaaagatgaacgattgggcacttccgagaaacca
gattggatcacaataagtgccactgttacatttataaagggtgagaatttttgctatcct
gcctgtcccctcatgataggagatcgacagtgcaacaaaaaagtgacaaataatggggat
gggaaatggcggtgtgacaggtgtgatcagactgttgatgaatgcgaatataggtacatt
cttcagttccagattcaggaccatactggcttaacctgggttactgcatttcaggaatgt
ggtgaccagatcatgggtgtctctgcaaaagaactgtatttcctaaaatatgaggggcag
gatgatgatagatttacagatatcatgcgtaatgtcttattcaacaaatttatcttcaaa
ttgaaagtgaaagaagagatgtttagcgatgaacagcgcgttaagtcaacagtggtcaaa
gcagagaagctgaacttccaatcagagatccggtttctgttggatttgatagacaagaac
aatgggctggaatccagtactctgcctcctaagacagatgatacaactccaacttcaggg
tatggtaatgctggatttgggagtagaaccatagaaccgatgaatcctgttgcaaattat
ggtggcagcaatagcagtatcagcagagaaagtggactgcagggaaatcagcaaggtcaa
tacggaaataagtttactggctcacagtttgctccacctggttctacaggcatgtatatg
agctgtaatagttgtggtggaacaggccatagtgcttcaaactgtccaagcatcatgagt
ggtcagggccaggcatatggaggtggctttggcaataggggaacgtcaggaatgagcagt
gatggtgcttccggtgagtgctataaatgccatcagtttggacattgggcaagagattgc
ccaggtgtaagcaatgcaccccctgccaataacatgacccctgcttcaggaatgagcagt
ggtggtgcttccggtgagtgttataaatgccatcagtttggacattgggcaagagattgc
ccaggtgtaagcagtgcacccgctgccaataacatgactcctggaagatatgggaatcct
ccgcggcaacgtgttggtggattttga
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