Nicotiana attenuata (coyote tobacco): 109224988
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Entry
109224988 CDS
T05870
Name
(RefSeq) probable pectate lyase 12 isoform X1
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
nau
Nicotiana attenuata (coyote tobacco)
Pathway
nau00040
Pentose and glucuronate interconversions
nau01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
nau00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
109224988
Enzymes [BR:
nau01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
109224988
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Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
NosD
Motif
Other DBs
NCBI-GeneID:
109224988
NCBI-ProteinID:
XP_019245120
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Position
4:10985286..10990526
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AA seq
491 aa
AA seq
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MLERSCIVIFLIFTSFFHFGLGMFMNLTLPGQHPDPEAVVLEVNRKVNASLSLLQSRRKM
LSYTPSDQSCQTGNPIDDCWRCDHNWQLNRQRLADCAIGFGQYALGGKGGRYYVVTSSSD
PDPVSPPPGTLRYGVIQEEPLWIVFAANMEIKLSEELIFNSYKTLDGRGVNVHITGGGCV
TLQYISNVIIHNIHIHHCYESGETNIRSSPTHFGWRTKSDGDGISIFGSRDIWIDHCSLS
NCKDGLIDVVMGSTGITISNNHFSHHNEVMLLGHSDDYLPDSGMQVTISFNHFGKKLIQR
MPRCRRGYIHVVNNDFTRWEMYAIGGSGNPTINSQGNRYIAPFNPFAKEVTKRVDTGEEK
WRNWNWRSEGDVMANGAYFVASGEGVEVKYEKAYSVEPKSADFIDQITMNAGVLIHRGSN
SGKWTAATNDTDGAVDGGGEDLVAISGDAEDYDGDEESGSSTLYSNSLLFTCLMVLLAFL
FIHVKVTTMLL
NT seq
1476 nt
NT seq
+upstream
nt +downstream
nt
atgctagaaagaagctgcattgtgattttcttgattttcacttcattttttcactttggt
ttgggtatgtttatgaaccttactcttcctggtcagcatcctgatcctgaagctgttgtt
cttgaagttaatagaaaagtgaatgcatcactctcactactccaatcaagaagaaaaatg
ttgtcctacacccctagtgatcaatcttgccaaactggcaatcctatcgatgattgttgg
agatgtgaccataattggcaattaaatcgccaaagactagccgattgtgccataggtttt
ggccaatacgccttaggtggcaaaggtggtcgttactatgttgtcacctcgtcctcggac
cctgaccctgtcagcccgccacctggcactctccgatacggcgtcattcaagaagaacca
ttatggattgtctttgccgctaacatggaaatcaaactctcagaagaactcattttcaac
tcgtataaaaccctagatggtcgcggagttaacgttcacattactggtggagggtgcgta
acgttacaatatatctcaaacgttattatacataatattcatatacatcattgttatgaa
tctggtgaaactaatataagatctagtcctacacattttggttggagaacaaaatcagat
ggagatggaatttctatatttggatcaagagatatttggatagaccattgttcattatca
aattgtaaagatggtttaattgatgtagtaatggggtctactggtattacaatatcaaat
aatcatttttcacatcataatgaggtaatgttattaggtcatagtgatgattatttgcca
gattcaggaatgcaagtgacaatttcttttaatcattttgggaagaaattaattcaaaga
atgccaaggtgtagaagaggttatattcatgttgtgaataatgattttacaagatgggaa
atgtatgcaattggaggaagtggtaatcctactatcaacagtcaaggaaatcgatatatt
gcacctttcaacccttttgctaaagaggtaacaaaaagagtggatacaggagaagaaaaa
tggaggaattggaattggagaagtgaaggggatgtaatggcaaatggagcatactttgtg
gcctcaggtgaaggagttgaagttaaatatgagaaggcttatagtgtggagcccaagtct
gctgatttcatcgaccaaattacaatgaatgctggtgttcttattcacaggggaagcaac
agtggtaaatggactgctgccaccaatgacaccgatggcgcggtggatggtggcggagaa
gatttggtggcgatttccggcgacgcagaagactatgatggtgatgaagagtctgggagt
tctacactttactctaactctttgctatttacttgtctaatggtattgttagccttcttg
tttattcatgtcaaagtaacaaccatgcttttgtag
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