Nicotiana attenuata (coyote tobacco): 109225000
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Entry
109225000 CDS
T05870
Name
(RefSeq) polyadenylate-binding protein 2-like
KO
K13126
polyadenylate-binding protein
Organism
nau
Nicotiana attenuata (coyote tobacco)
Pathway
nau03015
mRNA surveillance pathway
nau03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nau00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
109225000
09123 Folding, sorting and degradation
03018 RNA degradation
109225000
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nau03019
]
109225000
03041 Spliceosome [BR:
nau03041
]
109225000
Messenger RNA biogenesis [BR:
nau03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
109225000
mRNA cycle factors
Stress granule specific factors
109225000
Spliceosome [BR:
nau03041
]
Complex C
Other components
Complex C specific factors
109225000
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_10
RRM_occluded
RRM_5
RRM_7
RRM_Nup35
RRM_RdRP1_2
RRM_3
RRM_MARF1
HPS3_C
Motif
Other DBs
NCBI-GeneID:
109225000
NCBI-ProteinID:
XP_019245133
UniProt:
A0A1J6JAG2
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All DBs
Position
4:complement(11433598..11438305)
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AA seq
662 aa
AA seq
DB search
MALQVHHQTPVAGQNGVAATAGGGGAVGSPPPVVGNSQVVVSTSLYVGDLDFNVNDSQLY
DLFNQVGQVVSVRVCRDLSTRRSLGYGYVNYSNPTDAARAMEVLNFTPINGKSIRIMYSH
RDPSIRKSGAANIFIKNLDKSIDNKALHDTFSSFGNILSCKIATDSNGQSKGYGFVQFDS
EEAATSAIAKLNGMLINDKQVYVGHFLRKQERDSAVSKTKFNNVYVKNLAESTTDEELKK
TFGEFGNITSAVVMRDADGKSKCFGFVNFENADDAAKAVEALNGKKFDDKEWYVGKAQKK
SEREQELKSKFEQTAKEVVDKYKGVNLYIKNLDDTIDDDKLKELFSEFGTVTSCKVMRDP
SGISRGSGFVAFSTPEEASKALSEMNGKMIVSKPLYVALAQRKEERRARLQAQFSQLRPV
AMAASMAPRMPMYPPGAPGMGQQLFYGQAPPGMIPPQAGFGYQQQLVPGMRPGGAPLPNF
FMPLVQQGQQGQRPGGRRGAGPVQQTQQPMPMMQQQMLPRGRMYRYPPGRNGQEAPIPGL
AGGMLSVPYDMGGMLPREAAMGQPMPISTLASALANAPPEQQRTMLGESLYPLVDQLEHE
HAAKVTGMLLEMDQTEVLHLLESPEALKAKVNEAMDVLKNVQQANSPADQLASLSLNDNL
VS
NT seq
1989 nt
NT seq
+upstream
nt +downstream
nt
atggcgctacaggtgcatcaccagactccggtggcgggtcaaaatggtgtggcggcaacg
gctggcggcggcggcgccgtgggttcaccgccgccggtggtaggaaacagccaggttgtt
gtgtcgacgtcactttacgtgggtgaccttgattttaacgtgaatgattcgcagctatat
gatctgtttaaccaggttggtcaggtagtatcggttagggtttgtagggacttgagtact
aggagatcccttggttatggctacgtgaactacagcaacccgacagatgccgccagggca
atggaggtgttgaacttcactcctattaatgggaagtccattaggataatgtattctcat
agagaccccagtatccgtaagagtggagcagctaatatttttattaagaatttggacaag
tctattgacaacaaagctttacatgacactttttcaagctttgggaacattctttcttgc
aagatagctactgattctaatggccagtctaaaggctatggttttgtacaatttgacagt
gaagaggctgctacaagtgcaatagctaagttgaatggcatgcttatcaatgataagcag
gtgtatgttgggcattttcttcgtaaacaagaaagagattctgcagttagcaagactaaa
ttcaataacgtctatgtgaaaaatttggcagagtccacaacagatgaggaactgaaaaaa
acttttggtgagtttggtaatattactagtgcagtagtgatgagggatgctgacggaaaa
tccaagtgctttgggtttgtcaattttgaaaatgctgatgatgctgctaaggctgttgaa
gctttgaacgggaagaaatttgatgataaagagtggtatgttgggaaagctcagaagaag
tctgaaagggaacaagaactgaaaagcaagtttgagcagacagctaaggaggtagtagat
aaatacaaaggagttaacctgtacattaaaaatttggatgataccattgacgatgataaa
ctcaaggaacttttttcggagtttggcacagttacttcttgcaaggttatgcgagatcct
agtggaatcagcagaggatctggatttgttgctttctcaactccagaagaagcttccaaa
gctctttctgagatgaacgggaaaatgatagttagcaagccactctacgttgcacttgct
cagcgcaaagaggagagaagagctaggttgcaggcacaattttcacaactgcgaccagtt
gcaatggctgcatcaatggctcctcgtatgccaatgtatcctcctggtgcacctggtatg
ggacagcaactattttatgggcaggctcctcctggtatgataccaccccaggctggtttt
ggctatcaacagcagcttgttcctggaatgcggcctggaggagctcctttgcccaacttc
tttatgccattagtccagcagggtcagcaaggccagcgaccgggtggtcgacgtggtgca
gggcctgtgcaacaaactcagcagcccatgcccatgatgcagcagcagatgctcccaagg
ggaagaatgtatcggtatccacctggtcgtaatgggcaggaggcgccaataccaggcctg
gcagggggtatgctttctgttccatatgacatgggtggcatgctgcctcgagaagctgct
atgggacagcctatgccaatttcaacattggcttctgccctcgcaaatgcaccacctgaa
cagcagaggacgatgttgggtgaaagtctgtacccacttgttgatcagctggagcacgag
catgcagcaaaggtgacgggcatgcttcttgagatggatcaaactgaggttttgcatctg
cttgaatcaccagaggcgttgaaggccaaagttaatgaggctatggacgttttgaagaat
gttcagcaggctaatagccctgctgaccaactagcctctctctctctcaatgacaacctt
gtgtcttga
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