Nicotiana attenuata (coyote tobacco): 109225227
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Entry
109225227 CDS
T05870
Name
(RefSeq) RNA-binding protein 8A-like
KO
K12876
RNA-binding protein 8A
Organism
nau
Nicotiana attenuata (coyote tobacco)
Pathway
nau03013
Nucleocytoplasmic transport
nau03015
mRNA surveillance pathway
nau03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
nau00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109225227
09122 Translation
03013 Nucleocytoplasmic transport
109225227
03015 mRNA surveillance pathway
109225227
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nau03019
]
109225227
03041 Spliceosome [BR:
nau03041
]
109225227
Messenger RNA biogenesis [BR:
nau03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
109225227
Spliceosome [BR:
nau03041
]
Complex C
Other components
EJC/TREX
109225227
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_5
RRM_3
Motif
Other DBs
NCBI-GeneID:
109225227
NCBI-ProteinID:
XP_019245369
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All DBs
Position
5:6496904..6502768
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AA seq
193 aa
AA seq
DB search
MANVEEAVDFEPEEDDLMDEDVDASSPRATIPKLKSAITGGGSSASKKTKGRGFREEAAE
AERNARLSARFDSLDTDGGPGPERSIEGWIVLVTGVNEEAQEDDIHNEFGEFGEIKNLHL
NLDRRTGFVKGYALIEYENFEEAERAINEMDGKELLTQPIHVDWAFSKGPFRRRNARRRS
PRSHRSRSPRRRL
NT seq
582 nt
NT seq
+upstream
nt +downstream
nt
atggcgaacgtggaggaggcagtggatttcgagccagaggaagacgatctgatggacgaa
gacgttgacgcttcgtcgcctagggctaccattcctaagcttaaatcagccattactggc
ggcggctcttctgcttctaagaaaaccaaaggccgtggtttccgtgaagaagctgctgag
gctgaacgcaatgctcgcctctctgctcgatttgattctctcgacaccgatggtggccct
ggacctgaacgctccattgaaggatggattgttttagtcactggagttaatgaagaggca
caagaagatgatattcataatgaatttggtgagttcggggagatcaagaatttgcatttg
aatctggatcgtcgtactggatttgtcaagggttatgcacttattgaatatgaaaacttt
gaagaagcagagagagctatcaatgaaatggatgggaaagagctgctcactcagccaata
catgttgattgggcattcagcaaaggtccttttaggaggagaaatgctaggaggaggtcg
ccacgcagtcatcgttctagaagtcccaggaggagattgtaa
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