Nicotiana attenuata (coyote tobacco): 109225266
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Entry
109225266 CDS
T05870
Name
(RefSeq) uncharacterized protein LOC109225266
KO
K18195
rhamnogalacturonan endolyase [EC:
4.2.2.23
]
Organism
nau
Nicotiana attenuata (coyote tobacco)
Brite
KEGG Orthology (KO) [BR:
nau00001
]
09190 Not Included in Pathway or Brite
09191 Unclassified: metabolism
99980 Enzymes with EC numbers
109225266
Enzymes [BR:
nau01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.23 rhamnogalacturonan endolyase
109225266
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Gene cluster
GFIT
Motif
Pfam:
Rhamnogal_lyase
CBM-like
fn3_3
CarboxypepD_reg
RhgB_N
CarbopepD_reg_2
Motif
Other DBs
NCBI-GeneID:
109225266
NCBI-ProteinID:
XP_019245419
UniProt:
A0A1J6IER6
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Position
5:9262900..9272643
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AA seq
683 aa
AA seq
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MNKMGWKRQWRLVSLFCAIVFQLFLLVCGSRTDHFRQTPLRISQKLISTTPPVKLHISRN
YVVMDNGIVQVTLTNPTGAIAGVRYNGIDNVLEHDFKDTNRGYWDTVWERPGDKGHTFDM
LLATNFRVVAQNENKLEVSFTKTWNASINSSAHDLPLNIDKRFVMLRGSSGFYSYGIFEH
LKGWPSLIIEEARIAIKLRRALFHYMAISDDMQRMMPTDEDRSAGQVLDYKEAVLLTHPS
NPKLKGEVDDKYQYSFENKDIKVHGWVCNTPHVGFWVITPSNEYCNGGPMKQDLTSHAGP
TSLAVFFSGHYAGPELGVTLKEGEAWKKVFGPVFFYLNSDSGDNHRTLWEDAKRQMQEET
AKWPYDFPESLDYPHANERGIVRGQLFVRDRYINKDPIYAKSAYIGLALPGDVGSWQYET
KGYQFWTQTDKTGQFKITGVRPGTYSLYSWVPGIIGDYKYNYDINVKQGSDIKLGNLVFD
PPRNGPTLWEIGIPDRTAAEFFVPDPLPGLRNQLFNNNITQKFRQYGLWDRYTDLYPNKD
LVYKVGVSDYQKDWFFAHVTRRTRSKNYIPTTWQILFGLPSVDPKGTYTLRVALASATYS
HLQGRINDQSRPKPHFEIPAIGRSNAIARHGIHGLYRLFSFQIQGYELQKGENTIYLKQI
KSGNPFYGHHYDYIRLEGPPQKN
NT seq
2052 nt
NT seq
+upstream
nt +downstream
nt
atgaataagatgggttggaagaggcaatggcgtctggtttcattgttttgtgctattgtt
ttccagcttttcttgcttgtttgtggttcaaggacggaccattttaggcaaactccactg
aggattagtcaaaagttgatatcaactactcctcctgtcaaactgcatatctcacgtaat
tatgtagtgatggataatggcattgtccaagttactctaactaatccaactggagccatt
gctggggtgcgttacaatggtattgataatgtcttagagcatgacttcaaagatacaaat
agaggatattgggataccgtgtgggaacgtcctggagacaagggtcacacttttgatatg
cttttagcgacaaatttcagagttgttgcacaaaatgaaaacaaactggaagtttctttc
acaaaaacatggaatgcctccattaatagttctgcccatgatcttcctctaaatattgac
aaaaggtttgtgatgttgcgtgggagttctggattttattcatatgggatatttgaacac
ttgaagggctggcctagtctaattattgaggaagccaggattgccatcaagcttagaagg
gctttgtttcactatatggccatatcagatgatatgcaaagaatgatgccaacagatgaa
gatcgctctgctggccaagtccttgactacaaagaagctgttttactaacacatccatca
aatcctaaacttaagggagaggtggatgacaagtaccaatattcgttcgaaaataaggat
atcaaagtacatggatgggtttgcaatactccgcacgtagggttttgggtgatcacacct
agtaatgaatactgtaacggcggaccaatgaagcaagatcttacttctcatgctggtccg
acatccttagcagtatttttcagcgggcattatgcagggccagaattgggagtcacactc
aaagaaggagaggcatggaaaaaggttttcggccctgttttcttctatcttaactcagac
tctggtgacaaccaccgtacactttgggaagatgctaaaagacagatgcaggaagaaact
gcaaaatggccatacgatttcccagaatctcttgactatccccatgctaatgaacggggt
atagttagaggtcaattatttgtacgagacaggtacataaacaaagatcctatatatgca
aaatctgcatatattggattagctcttcctggagatgttggatcatggcaatatgagacc
aaaggttatcaattttggactcaaacagacaagactggacaattcaagatcactggtgtt
agacctggaacttatagcttgtattcttgggtccctggaattattggagattacaaatac
aactatgacataaatgtcaaacaaggaagtgatattaagttaggtaacctagtttttgat
cctccaagaaatggtccaactctatgggaaataggcattcctgatcggactgctgcagag
ttctttgtacctgatccattgcctgggctcagaaaccagttattcaataataatataaca
caaaaatttagacaatatggtttgtgggatcgttacactgatttatatccaaataaagat
ttggtatataaagttggtgttagtgattatcaaaaagattggttctttgctcatgttaca
aggagaactagaagcaagaattatataccaacaacatggcaaattttatttggactacca
agtgttgatccaaagggaacttatacactacgtgtagcattggcttctgcaacctattcg
catttacaggggaggatcaatgaccaatctagaccaaagcctcattttgaaattccagca
attggaaggagtaatgcaatagctagacatggaatacatggactatataggctcttcagt
ttccaaattcaagggtatgaattacaaaagggagaaaatacaatatatttaaagcaaatt
aaaagtggtaatcctttctatggacatcactatgactacattcgtttggaaggccctcca
caaaaaaattaa
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