Nicotiana attenuata (coyote tobacco): 109225521
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Entry
109225521 CDS
T05870
Name
(RefSeq) vacuolar protein sorting-associated protein 8 homolog
KO
K20178
vacuolar protein sorting-associated protein 8
Organism
nau
Nicotiana attenuata (coyote tobacco)
Pathway
nau04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
nau00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
109225521
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
nau04131
]
109225521
Membrane trafficking [BR:
nau04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
109225521
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_Vps8
Beta-prop_VPS8
TPR_Vps41
Clathrin
VPS8_N
WD40_CDC20-Fz
TPR_VPS8_2
ANAPC4_WD40
Beta-prop_EML_2
Beta-prop_EML
WDR55
zf_RING_Vps8
Beta-prop_RIG_2nd
WD40_WDHD1_1st
WD40
WD40_Prp19
Beta-prop_HPS5
zf-RING_Vps41
Motif
Other DBs
NCBI-GeneID:
109225521
NCBI-ProteinID:
XP_019245760
UniProt:
A0A1J6IFK5
LinkDB
All DBs
Position
5:24047829..24075063
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AA seq
1898 aa
AA seq
DB search
MELDLDSFLESHADDDDDDHLLHHRTVDEILLNHSSSSSSSSPSPPSSPSAAHGHNYLDR
RSRSVDSSSQSTGPRAESISSKQSSEFSSPPVGQSVLPPFFNGVIRSNSKPGDALAAAVA
ASRSIPAPRAAAIKSRRASSAVLQRALESDASPSIAPPTRNETNVSDKNLNTFGRSGFLH
EIGSENIDLEVDSKDQFQAAQAQLSDMDETSREVSTVDAGQDNTSFAGDDVSEMEEFSNK
SNLKEAPNYTGTLVEFPTRTEKDLIFNERSGLDEIEDRQVQSLSGGEDNVASADSSEEAA
TNQILSSPVYGSLSDEDSTEKDGAKHELENVISQSKEEDISSHGDENDSLNDAASIIEEL
VLQGESMRDSTTPLKKYHSALKPLELAEEAEKKQAFTAMHLEEGAAAQPMRLDGVHRGSN
VLGYFDVDDNNTISQTLLSQAFRREHGSSQVLAVHLNYIAVGMSRGSILVMPSRYSPHHA
DDMDAKMLIFGLPRDRPQVPVTSLSFNQQGDLLFAGYGDGHYTVWDVQRASVLKVVTEHK
APVVHLLYLGQDSQVTRQFNVLSGDTKGVVKFSRFKVLPLINMISLSKSQEILTENNSTT
ICAVPLLSGESYGGAMMASLDGGNPSLIEEGVVIFGTHQYALVAKISPTFKVYAKIARSD
GVREGSMPYAAWKKSESMSIETSENVSLLAIAWDRRVQVAKLVKSELKVCWKWTTDSSAV
GLAWLDEQILVILTATGRLCLFSKDGNLIHQRSFAMDGSCGDDLMSYHAYFSNAFGNPEK
AHHNCLGVRGATLYILRPSQLVVSRLLSWKERIEVLHKGGDWTSALNMAMSLYDGRAQAV
IDLPSNLDDVQKTLIPYLVQLLLSYVDEVFSYIAVASGNQHGQSGQSNESKYDADFVDPD
IKEQYTVVGGVSVEFCLHIKRLDVLFDEIFPKFDAVNHKDTFLELLEPYILKDMLGSLPP
EIMQALVEHYSTKGWLQRVEQCVLHMDMLSLDFNQIVRLCREHRLHGALIYLFNKGLDDF
RTPLEELFLILRDSKRESATALGYKMLVYLKYCFQGLAFPPGRGTLPPTRVPSLKRELVQ
FLLEEASSPNSSTAMCLPYSGPHPNLLSLLELDTEATLDVFRYAFVEGGNESFSPAWNPA
NLKTETTEIDILAIEGENLVQKVVDVLAAILDMSYFQTGGSFNRKDERCTDIWPTKKDIE
YILDFISFFITFEKATVSKDTLRQILEYLTLGNETYPNVSGRIVETFNRRQKQLTALLEV
LPEEDWDAHYLLNLCERGQLHQVCGLIHAIRHQYLSALDSYMKAVDEPILAFVFIDGMLR
QPRGKESDAFRSAVISRIPDLLKLNREGTFFLIVNHLGEEKDYILSQLRSNPESLFLYLK
TLIEVHSTGTLNFSSLRKDNASDFRGSKRVMSSEVYLESLSDLPKLLQNYPIHITDEMTE
LYIELLCRYEPKSVLGFLETFESYRVERCLRLCQEYGIVDAAAFLLERVGDIGSALLLVI
SSLNEKFILLDTAVESKHCDAAPEHFKAILSKKEVTDILDILRTCIGLCQRNSPRLDPDE
AESLWFQLLDSFCEPLMDSQDHSKIRYKEEECMQEGQQACKIQWKVSKSHRNAHILRKLL
SVFIKEIVEGMIGYVSLPRIILKLLSDNETQEFGDFKPTILGMLGTYDFERRILDTAKSL
IEDDTYSSLSLLKRGASHGFAPRSLLCCICNCPLTKDFSASSIQIFSCGHAVHLQCEPQG
NEASCKGNSAGCPICMPRKNSERLRSKSVLVENGLVKTLSKSHQTHGMTALHPHENDGID
NFYGLQSISRFDLLLNLQKNHQSMQIENIPQLRLAPPAVYHEKVKKRNVPSAGESSNGLP
KMEKPSRSKHLRDVKLKGSSLRFPLKSNIFGKEKNIKL
NT seq
5697 nt
NT seq
+upstream
nt +downstream
nt
atggagcttgacctcgattcgtttttggagtcacatgctgatgacgacgacgatgatcac
ttactacatcatcgcactgttgatgaaattctcctcaaccactcctcctcctcctcttct
tcttcaccttctcctccttcttcgccatctgctgcacatggacacaattatctagatcgt
cgcagtcgctctgtagactcgtcttcccaatctacagggccaagagctgagtcaattagt
agcaaacaatccagtgaattttcttcaccaccggtaggccagagtgtgttgccaccattt
tttaacggggtcatcagatcaaattcaaagcccggggatgccttggctgcggcagtcgct
gcatcacgctccattcctgcacctcgtgcagcagccatcaaatccagaagagcaagctct
gcagtgttgcaaagggctttggaaagtgatgcatcgccttccatagctcctccaacccgt
aatgaaaccaacgtttcggacaaaaatcttaatacgtttgggcgctcagggtttttacac
gagattggttctgagaatattgacttggaagttgacagtaaggatcagtttcaagctgct
caagctcaactaagtgatatggacgagactagtagggaggtttctacagtggatgcaggt
caggataatacgagctttgctggagatgatgtttctgagatggaagaattttcaaataaa
agtaatttgaaggaagctccaaattatactggaactctagtggaatttcctactagaact
gaaaaagacttgatttttaatgagaggtctgggttggatgagattgaagataggcaagtt
caatctttatctggaggtgaagataatgttgcaagtgctgatagcagtgaagaagctgct
acaaatcagatactctcttctccagtttatggaagtctttctgacgaagattcgactgaa
aaggatggtgctaaacatgagcttgagaatgtaatttctcaatctaaagaggaggatatc
agttcccatggagatgaaaacgattctctaaatgatgctgcaagtatcattgaggagtta
gttctacaaggggaaagtatgagggatagtacaacgcctctgaaaaaatatcactctgcc
ttgaagcccctagaattggctgaggaagctgaaaagaagcaggccttcacggctatgcac
ttggaagagggtgctgctgctcaaccaatgaggcttgatggagttcataggggttctaat
gtcttgggttactttgatgtagatgataacaacactattagtcaaaccctgttatctcaa
gctttcaggcgagaacatggatcttcgcaggtcttggctgttcacctcaactacattgct
gtgggaatgtccagaggatcgattcttgtgatgccaagcagatactctccacatcatgct
gatgacatggatgctaagatgttgatttttgggttgccgagagatagacctcaagtccct
gtaacttccttgagctttaatcagcaaggggacttgctctttgcaggatatggtgatggg
cattatactgtatgggatgtgcaaagggcctctgtgcttaaagttgtcactgaacataaa
gctccagtggtgcaccttttatatttagggcaggattctcaagttactcgtcagtttaat
gtgctcagcggtgatactaaaggtgtagttaagtttagccggtttaaagtgcttcccttg
atcaacatgatctccctttcaaagtcacaggaaatactaacggaaaacaatagcactaca
atatgtgctgtgccactactatctggtgaaagttatggaggtgcaatgatggcttctcta
gatggaggcaacccttctttgattgaggaaggtgtggtcatatttggcacacaccaatat
gctctcgtggcaaaaataagccccacgtttaaagtttatgctaaaattgcacgctctgat
ggtgttagggagggttcaatgccatatgctgcttggaagaaatcagaaagtatgtccatt
gaaacatcagaaaatgtttcactgcttgcaattgcttgggatcgaagagttcaggtggct
aagctggtgaaatcagagctaaaagtttgttggaaatggactacagatagctcagcagtt
gggctggcatggttggatgaacagattttggtaattctcacggcaactggacgactttgt
ttgttttcaaaagatgggaacttgatccaccagagaagtttcgctatggatggatcttgt
ggagatgatctcatgtcataccatgcctacttcagcaatgcttttggaaaccctgagaaa
gcgcatcacaattgtttaggtgtcaggggggcaacgttgtacattctgcggccatcccag
cttgttgtttcacgccttctttcctggaaggaacgaatagaggttttgcataaaggaggt
gactggacgagtgcgctgaacatggcaatgtctctttatgatggtcgagcacaagcagtt
attgaccttccaagtaatttggatgatgttcagaagactcttataccatatcttgtacag
ttgctgctgtcatatgtagatgaggtattctcctacatagcagtggcatctggcaaccaa
catgggcagtcaggccaatcaaatgaatctaagtacgacgctgactttgtggatcctgat
attaaggagcagtacactgtggttggtggtgtttccgttgaattctgtcttcatatcaag
agacttgatgttctatttgatgaaatttttccgaagtttgatgctgtgaatcacaaggat
acttttttggagcttctggagccatatattttgaaagacatgctaggatctttaccacct
gagataatgcaagcactagtggagcactacagcactaaaggttggttacagcgtgttgaa
cagtgtgtcctccacatggacatgttgtccctggatttcaatcagattgttcgcctatgc
agggagcataggctgcatggtgcattgatctacttgttcaacaaaggtcttgatgatttt
aggactcctttggaagagctctttttaattttgcgagatagcaaaagagaaagtgctact
gctcttgggtataagatgctcgtttacctcaagtactgcttccaaggtcttgcttttcct
ccagggcgtggaactctccctcccacacgtgtgccgtctcttaaaagagagcttgtgcaa
tttttgttggaggaagcgagttctccaaattcttctacagcaatgtgcttaccatacagt
ggaccgcacccaaacctgctctctctgttagagctcgacacagaggccaccttagatgtt
ttccgatatgcatttgtagaaggtggaaacgaaagtttcagtccagcatggaatccagct
aatttaaagacggaaacaactgaaatagacattttagctattgaaggcgaaaacttagtt
cagaaagtagtagatgttcttgctgccattcttgatatgagttatttccaaactggtggt
tcttttaaccgtaaagacgaaagatgtaccgacatttggcctacaaagaaagatattgag
tacatattagattttatttccttttttattacctttgaaaaagctacggtttcaaaagat
acccttcgtcaaattcttgagtacctaacactggggaacgaaacttaccccaatgtgtct
gggcggattgttgaaaccttcaacagaagacagaagcaactgactgcactgttagaagtt
ctgccagaggaagattgggatgcacattacttactgaatttatgtgagaggggtcaactg
catcaggtctgcggcttaattcatgccatccgacatcagtatctttctgctttggacagt
tatatgaaagctgttgatgagcctattcttgctttcgtatttattgatggcatgttgcgg
caaccgagaggcaaagaatctgatgcttttagatcagcagtcatttctcgaatcccagat
ctactcaagttgaacagggaaggaaccttttttctgattgtcaatcatttaggagaggag
aaggattacattttgtctcagctgcggtctaatcctgaaagtcttttcctttatctgaag
acgctcattgaagttcattcaacaggcaccctaaacttctcttctctaagaaaagataat
gcttcagactttcgtggaagcaagagagttatgtcctctgaagtctacctggaaagcttg
tctgacttacctaagctcctgcagaattatccaattcacataactgatgaaatgacagag
ctttatattgagctgttatgtaggtatgagcctaagtcagtccttggatttttggagact
tttgaaagctatagggtggaacgctgcttgcgtttgtgccaggagtatggaattgtagat
gcagctgctttcttgttagaaagggttggtgacattggaagtgcccttttgcttgttata
tcttcacttaatgaaaaattcatcctgcttgatactgctgttgaaagtaaacactgtgat
gcagctcccgagcatttcaaagctattttaagcaagaaagaggtcactgacatactagat
attttgcgtacttgtattggactgtgccagagaaacagcccccgattggaccctgatgaa
gcagagagtctctggtttcaattgcttgattctttttgtgagcctttgatggattcacag
gatcatagtaaaataaggtacaaagaagaagaatgcatgcaagaaggtcagcaggcttgc
aaaattcagtggaaggtatcaaaatctcatagaaatgctcacatcctcaggaaattgctt
tctgtgtttatcaaagagattgtcgaaggaatgattggatatgtaagcctcccaaggatc
attctaaagcttctttcagacaatgagacacaggaatttggtgattttaaacctactata
ctggggatgcttggaacatatgattttgagaggcggattttggacactgctaaatcattg
atcgaagatgatacttattcctccttgagcttacttaagagaggagcttctcatggattt
gcaccgcggagcctcctatgttgcatttgtaactgtcccctcacaaaagatttctcagct
tctagcattcaaattttcagttgtggtcatgcagtacatctccaatgcgaacctcaggga
aatgaagcttcatgcaagggcaactcagctggatgtcctatttgtatgccaagaaagaat
tcagagaggttgagaagtaaatccgtgcttgtggagaatggattggtgaagactctatca
aaatcccatcaaacacatgggatgactgctcttcatccccatgagaatgatggtatcgac
aacttctatggactccagtccatttcaaggtttgacctcctgcttaatcttcaaaagaac
catcagtcaatgcaaatagagaatattcctcagttgaggcttgcaccacctgctgtgtac
catgaaaaggttaagaaaagaaatgttccctcagctggagaaagcagcaatggtctgcca
aaaatggagaaacccagcaggagcaagcatctcagagatgtaaaacttaaaggatcatct
ttaagattccccctaaaatcaaacatatttggaaaagagaagaacattaagctgtga
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