Nicotiana attenuata (coyote tobacco): 109225846
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Entry
109225846 CDS
T05870
Name
(RefSeq) cell division cycle protein 48 homolog
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
nau
Nicotiana attenuata (coyote tobacco)
Pathway
nau04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
nau00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
109225846
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nau03019
]
109225846
03009 Ribosome biogenesis [BR:
nau03009
]
109225846
04131 Membrane trafficking [BR:
nau04131
]
109225846
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
nau04147
]
109225846
Messenger RNA biogenesis [BR:
nau03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
109225846
Ribosome biogenesis [BR:
nau03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
109225846
Membrane trafficking [BR:
nau04131
]
SNARE
SNARE associated proteins
Others
109225846
Autophagy
Aggrephagy
Other aggrephagy associated proteins
109225846
Exosome [BR:
nau04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
109225846
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
RuvB_N
AAA_16
CDC48_2
AAA_2
AAA_5
AAA_33
AAA_14
AAA_22
TIP49
NPHP3_N
RNA_helicase
AAA_17
nSTAND3
AAA_28
Mg_chelatase
nSTAND_NTPase5
Parvo_NS1
AAA_18
ATPase_2
ABC_tran
NB-ARC
Viral_helicase1
AAA_7
NACHT
Vps4_C
TsaE
AAA_lid_PRS2_C
IstB_IS21
DUF815
Zeta_toxin
AAA_24
Zot
Motif
Other DBs
NCBI-GeneID:
109225846
NCBI-ProteinID:
XP_019246181
UniProt:
A0A1J6JM35
LinkDB
All DBs
Position
1:complement(45704592..45710550)
Genome browser
AA seq
805 aa
AA seq
DB search
MSHQAESSDSKGAKKDFSTAILERKKSPNRLVVDEAVNDDNSVVALNPATMEKLQLFRGD
TILIKGKKRKDTVVIALADETCDEPKIRMNKVVRSNLRVRLGDVVSVHQCPDVKYGKRVH
ILPIDDTIEGLTGDLFDAFLKPYFLEAYRPLRKGDNFLVRGGMRSVEFKVIETDPGEYCV
VAPDTEIFCEGEPVKREDEERLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVK
PPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKN
APSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPA
LRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLAEEVDLERISKDTHGYVGADLAALCT
EAALQCIREKMDVIDLEDDSIDAEILNSMAVTNEHFQTALGTSNPSALRETVVEVPNVSW
EDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ
ANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGA
ADRVLNQLLTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQI
FKACLRKSPLSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIEKERKRSEN
PDSMDEDADDEIAEITPSHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGTEFRFAE
TSGGAAATDPFATSNAGADDDDLYS
NT seq
2418 nt
NT seq
+upstream
nt +downstream
nt
atgagtcaccaggccgagtcatctgactcaaaaggtgcgaagaaggatttctctacggcc
attttggagcggaagaagtctccaaatcggcttgtcgttgacgaggcggtcaacgatgat
aactccgtcgtcgccctaaatcctgccaccatggagaagctccagctcttccgtggagat
acaattctcatcaagggaaagaaaaggaaggatacagttgtcattgcccttgctgatgaa
acgtgcgacgagccgaagattaggatgaacaaggttgtccgttcaaatttgagggttcgg
cttggagatgttgtgtctgtgcaccaatgtccagatgttaagtatggaaagcgtgtgcac
atacttcccatagatgatacaatagaaggtctcaccggggatttgtttgatgctttcttg
aaaccttactttttggaagcatatcgtcctttgaggaaaggggacaatttccttgttaga
ggagggatgagaagtgtggaatttaaagtcatcgagactgaccctggggagtattgtgtt
gttgctccagacacagaaatcttttgtgagggggagcctgttaaaagggaggatgaggag
agactggatgaagttggctatgatgatgttggtggtgtgagaaaacagatggctcagatt
cgtgaattggtggaattaccattgaggcatccgcagctttttaaatccattggtgtgaaa
ccaccaaaggggattttactttatggaccccctggatctgggaagaccctgatagccaga
gctgtggctaatgaaacaggtgcatttttcttttgcattaatggaccagaaatcatgtcc
aaattggctggagagagtgaaagcaatctcaggaaggcgtttgaagaggctgaaaaaaat
gctccatctattatattcattgatgaaattgattcaattgctcccaagcgagagaagaca
catggtgaagttgagagaaggattgtttcacagctcctgacactgatggatggattgaaa
tctcgtgctcatgtcatagttatgggagctaccaatcgtcctaacagcattgatcctgct
ctcagaaggtttggtaggtttgatagggaaattgacattggtgttcctgatgaagttgga
cgccttgaagttcttcgtattcataccaagaatatgaagcttgcagaagaagttgatttg
gaaagaatctcaaaagatacacatggttatgttggtgcagatcttgctgctctttgcact
gaagctgcacttcagtgtattagagagaaaatggatgtcattgatcttgaagatgattcc
attgatgctgaaatattgaattcaatggctgtcacgaatgagcacttccaaactgctcta
ggaacaagcaatccatccgcattgcgtgaaacagttgttgaagtgcctaatgtctcatgg
gaagacattggaggccttgaaaatgtcaaaagagagcttcaagagactgttcaatatcct
gtggagcatccagagaagttcgagaagtttggtatgtcaccttcaaaaggtgttcttttc
tatggtcctccaggatgtgggaaaactcttcttgccaaggcaattgcaaatgaatgtcaa
gccaatttcatcagtgtcaaaggacctgagctgctcaccatgtggtttggagagagtgag
gccaatgtccgtgaaatttttgacaaggccagacaatctgcaccctgtgtccttttcttt
gatgagctcgactctattgctactcagaggggaagcagtgttggagatgctggtggagca
gctgatcgggttctgaaccaacttctgactgaaatggatggcatgaacgctaagaagacc
gtttttataattggggccacaaacaggcctgatataattgaccctgcacttctgcgacct
ggtcgacttgaccagttaatttatatcccactcccagatgaagactcgcgccatcagatt
ttcaaggcgtgtcttagaaaatctcccctctcaaaagatgttgatttgagagctcttgcc
aaatatactcagggattcagtggagctgatatcactgagatctgtcaacgtgcctgcaaa
tatgccataagggagaacattgagaaagatatagaaaaggaaaggaaacgaagtgagaat
cctgattctatggatgaggatgctgatgatgagatagcagagattacgccctcgcatttt
gaggagtcgatgaagtatgcacgacgaagtgtgagtgacgcagatatacgtaaataccag
gcatttgctcagaccttacagcaatctcgaggttttggaactgaatttcggtttgctgag
acaagtggtggggctgctgcaactgacccctttgcaacttctaatgctggagctgatgat
gatgacttgtatagctaa
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