Nicotiana attenuata (coyote tobacco): 109225880
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Entry
109225880 CDS
T05870
Name
(RefSeq) exosome complex component CSL4
KO
K07573
exosome complex component CSL4
Organism
nau
Nicotiana attenuata (coyote tobacco)
Pathway
nau03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nau00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109225880
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nau03019
]
109225880
Messenger RNA biogenesis [BR:
nau03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
109225880
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
109225880
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GFIT
Motif
Pfam:
EXOSC1
ECR1_N
RRP40_S1
RRP4_S1
ECR1_N_2
CHASE5
Motif
Other DBs
NCBI-GeneID:
109225880
NCBI-ProteinID:
XP_019246233
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Position
5:complement(55175261..55179866)
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AA seq
200 aa
AA seq
DB search
MTKAMETETQEAVTPGQVLGKASQLKAGKGAYVSTEHDTVYASLTGFRSLTPPPSDSLDQ
RPTVEVTGHKAHGAVPQPGSVVFARVTKVMPRMASADIVCVDSKSVREKFTGIIRQQDVR
ATEIDKVDMHLSFRPGDIVRALVLSLGDARAYYLSTAKNELGVVSAESAAGGTMVPISWT
EMQCPLTGQVEQRKVAKVEA
NT seq
603 nt
NT seq
+upstream
nt +downstream
nt
atgacgaaagcaatggaaactgaaactcaagaggcggtgacgccgggacaagtattgggt
aaagcgtcacagttgaaagccggtaaaggagcttacgtttcaaccgaacacgacaccgtt
tacgcctctctcaccggtttccgttctctcacacctccgccttctgactctcttgaccag
agaccaacagtggaagttactggtcataaagcccatggagctgttcctcagcccggttca
gttgtttttgctagagtcactaaggtgatgcctagaatggcttcagcagacatagtttgt
gttgattccaagtctgtacgtgagaaattcaccggcattattaggcaacaggatgtgaga
gcgactgagattgacaaagtcgacatgcatttgtccttccgtccgggtgatattgttcgt
gcattggtgctatcacttggagatgcacgggcatattatctgtcaactgcaaaaaatgag
ctgggtgttgtatctgctgaaagtgcagctggtggtaccatggttccaattagctggaca
gaaatgcaatgccctctaacaggtcaagtagaacagagaaaggtggccaaggttgaagct
tga
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