Nicotiana attenuata (coyote tobacco): 109226049
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Entry
109226049 CDS
T05870
Name
(RefSeq) uncharacterized protein LOC109226049
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
nau
Nicotiana attenuata (coyote tobacco)
Pathway
nau03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
nau00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
109226049
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nau03021
]
109226049
03019 Messenger RNA biogenesis [BR:
nau03019
]
109226049
Transcription machinery [BR:
nau03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
109226049
Messenger RNA biogenesis [BR:
nau03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
109226049
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NUFIP1
Motif
Other DBs
NCBI-GeneID:
109226049
NCBI-ProteinID:
XP_019246417
UniProt:
A0A1J6JJJ8
LinkDB
All DBs
Position
1:4272990..4279145
Genome browser
AA seq
683 aa
AA seq
DB search
MFPVQNPRPQRPSQFQTNGVAPSAPLQIMGNPGSFMQNPMQIQPQMAIPNINSNTQFSPQ
QLFAFQMNQMNNVNSQQPKGQFLAQNVANPPQFMNQNVAMQNLNQLLQLQMAMQMPGFGQ
VVPGNVPLYPNQVSQGMGLQNPNFAMNGHLGLINASGTVQQSMNGNLSKQMDNATRQLQG
QSPLMNSFGAVQHPQTQNFNAPASANLQVSQGMRPQSSNFVMNAHMGPVNANGVVQQSKN
GFPKQMSNATQQLQGQLPLMNPFGFVQQPQAQNFNTPASANTQVCQGMGPQISNFAMNAQ
LGLLNGNGAFQQSMNGLFEQMPNAAQQLLGQLPPINPFGFVQQPQTQNFNAPASANTQPQ
VNPECVGGLNKSIGNQHNSYNSNFSRNQKHGAKSMKSQFGKGKFSPHSKSLEKGHHRKGE
KKSFLANSVKPEMEKKRSLLVTYSAQEIRRWREERRKNYPSKSNLEKKPTEKSAETDDSS
SAAKLRRQRLKEILAKQAELGCEVAEIPSSYLSDSEKQGDGREQKRPLSRKERFQKKFNK
RERFNRNDRFSKKRRFGNSDSSNTRDQNGSTAGQVPETAREPTLLQKLLSSDIRRDKRHL
LQVFRFMTMNSFFKDWPEKPLRFPQVVLKETGQEIEAAEEIYDAIDTTIEKSSNDSDNDE
ENNIPEFAEAASELQENGNSESE
NT seq
2052 nt
NT seq
+upstream
nt +downstream
nt
atgtttcctgttcaaaatccaaggcctcagcgcccttctcagttccagaccaatggagtt
gctccttcagctcccctgcagattatgggtaacccaggaagctttatgcaaaaccctatg
caaattcagcctcagatggcgattccaaacatcaactcaaatactcaattttcccctcag
cagcttttcgcgttccaaatgaaccagatgaataatgttaactctcaacaaccaaaaggt
caattcttggcccaaaatgttgcaaaccctcctcaattcatgaaccagaatgttgcaatg
caaaatttgaaccagcttctgcaattacaaatggctatgcaaatgccagggtttggtcag
gttgttcctgggaatgttccattgtatccgaatcaggtgtctcagggtatgggacttcaa
aatcctaactttgctatgaatgggcatttgggtcttataaatgccagtggaactgtccag
cagtccatgaatggaaatttgtctaagcaaatggataatgcgactcggcaattgcaaggg
cagtcgccactgatgaactcttttggcgccgttcagcacccacaaactcagaacttcaat
gctcctgcttctgctaatttgcaggtttctcagggtatgaggcctcaaagttccaacttt
gttatgaatgcgcatatgggtcctgtgaatgccaatggagttgtccagcagtctaagaat
ggttttcctaagcaaatgtctaacgcgactcagcaattgcaaggccaattgcctctgatg
aatccttttggctttgttcagcagccacaagctcagaacttcaatactcctgcttctgct
aatacacaggtgtgtcagggtatggggcctcaaatttccaactttgctatgaatgcacaa
ttgggtcttttaaatggcaatggagctttccagcagtctatgaatgggttgtttgagcag
atgcctaatgcagctcagcaattgctaggccagttgcctccgataaatccttttggcttt
gttcagcagccacaaactcagaacttcaatgctcctgcttctgctaatacacagccacag
gtaaaccctgaatgtgttggtgggcttaacaaatcaataggcaaccagcataattcttac
aatagtaacttctcaaggaatcaaaaacatggcgctaaatctatgaagtcccagtttggc
aaagggaagttctcacctcatagtaaaagcctagaaaaaggtcatcacagaaaaggggag
aaaaaaagttttcttgctaattcagtgaaacccgagatggagaaaaagaggtctctcttg
gtgacttattcggcccaagaaatccggcggtggcgggaagaacgccgtaagaattacccc
tcaaaatcaaaccttgagaagaagccgacagagaaaagtgcagagactgatgatagttca
agtgctgccaagttgcgccgtcagcgacttaaggaaattctggccaagcaggctgagtta
ggctgtgaagttgcagaaataccatcatcctatctatcggattctgagaaacaaggggat
ggaagggagcaaaaaaggccattgagtagaaaagagaggttccaaaaaaagttcaataaa
agagaaagattcaatcgaaatgaccgcttctccaagaaacgaagatttggaaactctgat
tcatcaaatactcgtgatcaaaacggttctactgcaggtcaggttccagaaaccgcaaga
gaaccaacactactgcagaaactattgagttcagatattcggagagataaacgccaccta
ttgcaggtctttaggttcatgaccatgaattctttctttaaagattggcctgagaaaccc
ctgagatttcctcaagtggtacttaaggaaacaggacaagaaattgaagctgctgaagaa
atatatgatgctatcgatacaaccatcgaaaaatcatcaaatgacagtgacaatgatgag
gaaaataatattcctgaatttgcagaagcagctagtgagttacaagaaaatggtaactca
gaaagtgaatga
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