Nicotiana attenuata (coyote tobacco): 109226472
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Entry
109226472 CDS
T05870
Name
(RefSeq) small nuclear ribonucleoprotein SmD3b-like
KO
K11088
small nuclear ribonucleoprotein D3
Organism
nau
Nicotiana attenuata (coyote tobacco)
Pathway
nau03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
nau00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109226472
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nau03019
]
109226472
03041 Spliceosome [BR:
nau03041
]
109226472
03032 DNA replication proteins [BR:
nau03032
]
109226472
Messenger RNA biogenesis [BR:
nau03019
]
Eukaryotic type
mRNA processing factors
3' end processing
U7-dependent histone pre-mRNA processing factors
109226472
Spliceosome [BR:
nau03041
]
Complex A
U1 snRNP components
Sm proteins
109226472
U2 snRNP components
109226472
Complex B
U1 snRNP components
109226472
U4/U6.U5 tri-snRNP components
109226472
Complex C
U2 snRNP components
109226472
DNA replication proteins [BR:
nau03032
]
Eukaryotic type
DNA Replication Termination Factors
Telomerase complex (fungi)
Sm core complex
109226472
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SM-ATX
Motif
Other DBs
NCBI-GeneID:
109226472
NCBI-ProteinID:
XP_019246776
UniProt:
A0A1J6IRV5
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All DBs
Position
6:2197941..2206643
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AA seq
132 aa
AA seq
DB search
MSRSLGIPVKLLHEATGHIVTVEMKSGEVYRGSMVECEDNWNCQLESITYTAKDGRVSQL
EHVFIRGSKVRFMIIPDMLKNAPMFKRLEARIKGKGTSLGVGRGRAIAMRAKAQAAGRGA
APGRGVVPPVRR
NT seq
399 nt
NT seq
+upstream
nt +downstream
nt
atgagtcgaagcttaggcataccggtgaagcttctacatgaggcgacgggtcatatagtg
actgtagagatgaagagcggtgaggtttacagaggaagtatggtggagtgcgaggacaac
tggaattgccagctcgaaagcatcacttacactgctaaagatggacgtgtgtcacaactg
gagcatgtttttattagaggcagtaaagtcaggttcatgataatccctgatatgcttaaa
aatgcccccatgttcaagcgcctagaagctagaattaagggcaaaggtacatcacttggt
gttggacggggacgtgctattgcaatgcgagctaaagctcaggctgcaggtcgtggagca
gcacctggtcggggtgttgtgccccctgtaagaagatga
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