KEGG   Nicotiana attenuata (coyote tobacco): 109226559
Entry
109226559         CDS       T05870                                 
Name
(RefSeq) WD repeat-containing protein VIP3-like
  KO
K12602  WD repeat-containing protein 61
Organism
nau  Nicotiana attenuata (coyote tobacco)
Pathway
nau03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:nau00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    109226559
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:nau03019]
    109226559
Messenger RNA biogenesis [BR:nau03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Ski complex
     109226559
SSDB
Motif
Pfam: Beta-prop_WDR5 Beta-prop_THOC3 WD40 Beta-prop_WDR3_1st WD40_Prp19 WD40_WDHD1_1st WD40_CDC20-Fz Beta-prop_WDR3_2nd Beta-prop_EML_2 Beta-prop_WDR90_POC16_2nd Beta-prop_WDR36-Utp21_2nd WD40_Gbeta WDR55 WD40_MABP1-WDR62_2nd Beta-prop_CAF1B_HIR1 EIF3I Beta-prop_TEP1_2nd Beta-prop_WDR36-Utp21_1st ANAPC4_WD40 Beta-prop_EML Beta-prop_WDR75_1st Beta-prop_RIG_2nd WD40_MABP1-WDR62_1st Beta-prop_Aladin Beta-prop_WDR19_1st Beta-prop_EIPR1 Beta-prop_IFT122_1st WDR90_beta-prop_4th Beta-prop_Vps41 NBCH_WD40 WD40_RFWD3 Beta-prop_TEP1_C Beta-prop_IFT140_1st Beta-prop_WDR41 Beta-prop_SCAP Beta-prop_HPS5 Beta-prop_VPS8 Beta-prop_NUP159_NUP214 Beta-prop_SPT8 Beta-prop_WDR35_TULP_N CFAP43_N Ge1_WD40 Beta-prop_DCAF4 Beta-prop_WDR75_2nd Beta-prop_WDR11_1st Tricorn_2nd Beta-prop_ACSF4 Beta-prop_DCAF12 WD40_like Nucleoporin_N Beta-prop_pof12 Tricorn_N RMC1_N Nbas_N Beta-prop_IFT80_2nd Beta-prop_LRRK2 WDR54 DUF5711 DUF2415 PALB2_WD40
Other DBs
NCBI-GeneID: 109226559
NCBI-ProteinID: XP_019246893
UniProt: A0A1J6I9F6
LinkDB
Position
6:complement(6619017..6621772)
AA seq 324 aa
MKLAPLDSIQNAHDDSIWTASWIPSTEESPALLLTGGLDETVRLWDPKNLTCIQTFTGHC
LGVVSVTSHPTRRIAASASIDSFIRVFEVDTNETIATLEAPPSEVWQLQFSPNGSTLAAA
GGGSSSVKLWDTTQWQLITTLSIPRQGAAPQPSEKSSNKKFVLSVAWNPDGRLLACGSVD
GTISVFDVARAKFLHFLEGHSMPVRSLVFSPSLHDSRILFSASDDGHVHVYDAEGKTLLT
SLSGHSSWVLSVDVSPDGAAIATGSSDKTVRLWDLKMRAATQTLTNHTDQVWAVAFGPTS
RTDVRSCMLASVSDDKSLSFYQYS
NT seq 975 nt   +upstreamnt  +downstreamnt
atgaaattagctccactagacagtatacaaaacgcacacgacgactccatttggacggcg
tcatggattccgtcgacggaggaatcgccggcgctacttctcaccggaggtcttgacgaa
accgtgaggctctgggatccgaaaaacctcacttgtattcaaactttcaccggtcactgc
ctcggcgtcgtatctgttacatctcatcctactcggagaattgcggcatcggcttctata
gatagctttattagagtgtttgaggttgatactaatgagaccattgctactctcgaagct
cctccttccgaagtctggcaattgcagtttagtcccaatggtagcactctggcagcagct
ggtggtggtagttcatcggtcaagctatgggatactactcagtggcaacttattaccaca
ttgtcaattcctcgtcaaggagccgccccacaaccatctgagaaaagcagcaacaagaaa
tttgtcctttcagttgcatggaatcctgatggtagacttcttgcttgtggttcagttgac
gggactatctctgttttcgacgtagcacgtgccaaattccttcacttcttagaaggccat
agcatgcctgtgcgatctctcgtgttttcaccttcgcttcatgattcaaggatactcttc
tcagcatcagatgatggtcatgtacatgtatatgatgctgagggtaaaaccttgctaaca
tctttgtcgggtcattcaagttgggttctgagtgttgatgtctccccagacggggcagca
attgcaacaggatcaagtgacaagacggttaggctgtgggatcttaaaatgagagcggct
acacagactttgaccaaccatacagatcaggtttgggctgtggcttttggaccaacatca
aggactgatgttcggtcttgtatgcttgcaagtgtctctgatgacaagagtttatcgttc
tatcagtactcttga

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