Nicotiana attenuata (coyote tobacco): 109226603
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Entry
109226603 CDS
T05870
Name
(RefSeq) E3 ubiquitin-protein ligase COP1-like
KO
K10143
E3 ubiquitin-protein ligase RFWD2 [EC:
2.3.2.27
]
Organism
nau
Nicotiana attenuata (coyote tobacco)
Pathway
nau04120
Ubiquitin mediated proteolysis
nau04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
nau00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
109226603
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
109226603
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
nau04121
]
109226603
Enzymes [BR:
nau01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
109226603
Ubiquitin system [BR:
nau04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
109226603
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
109226603
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_CDC20-Fz
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_EML_2
Beta-prop_TEP1_2nd
WDR55
Beta-prop_RIG_2nd
Beta-prop_WDR19_1st
Beta-prop_EIPR1
WD40_MABP1-WDR62_2nd
Beta-prop_DCAF4
zf-C3HC4_2
EIF3I
Beta-prop_TEP1_C
Beta-prop_CAF1B_HIR1
Beta-prop_EML
Beta-prop_WDR90_POC16_2nd
Beta-prop_HPS5
WD40_MABP1-WDR62_1st
zf-C3HC4
WD40_like
Beta-prop_WDR75_1st
zf-C3HC4_3
WD40_RFWD3
zf-RING_2
zf-C3HC4_4
zf-RING_UBOX
Beta-prop_WDR35_TULP_N
DUF1664
U-box
Beta-prop_DCAF12
Beta-prop_SCAP
zf-RING_5
zf-RING_6
Beta-prop_IFT122_2nd
zf-RING_10
Motif
Other DBs
NCBI-GeneID:
109226603
NCBI-ProteinID:
XP_019246961
UniProt:
A0A1J6IBA4
LinkDB
All DBs
Position
6:11020689..11034308
Genome browser
AA seq
671 aa
AA seq
DB search
MVESSIGGVVPAVKGSVSVGGKEEEGGSVRNEDETEWELDRELLCPICMQIIKDAFLTSC
GHSFCYMCIITHLHNKSDCPCCSHYLTTSQLYPNFLLDKLLKKTSGRQISKTASPVEQFR
HSLEQGCDVSVKELDALLSMLSERKRKLEQEEAERNMQILLDFLQMLRKQKVDELNEVQH
DLQYIKEDISAVERHRIDLYRARDRYSMKLRMLADDPIGKKPWSSSTDRNFGGLFSTSWN
APGGLPTGNLTYKMVEGKAQISSPGPHRKDTSISELNSQHMSQSGLAVVRKKRVNAQFND
LQECYLQKRRLLANKSHVKEEKDTDVVKREGYSAGLEDFQSVLSTFTRYSRLRVIAELRH
GDLFHSANIVSSIEFDRDDELFATAGVSRRIKVFDFSSVVNEPADVHCPVVEMSTRSKLS
CLSWNKYTKNHIASSDYDGIVTVWDVTTRQSVMEYEEHEKRAWSVDFSRTDPSMLVSGSD
DCKVKVWCTKQEASVLNIDMKANICCVKYNPGSGVHIAVGSADHHIHYYDLRNTSQPVHI
FSGHRKAVSYVKFLSNNELASASTDSTLRLWDVKENLPIRTLRGHTNEKNFVGLTVNNEF
LACGSETNEVFVYHKAISKPVTWHRFGSPDVDDADEDAGSYFISAVCWKSDSPTMLAANS
QGTIKVLVLAA
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atggtggaaagttcgattgggggagtggtgccagcagtgaaggggtcagtgagtgtgggg
ggtaaagaggaggagggtggtagtgtaaggaatgaagatgaaacagaatgggaattggat
agggaattgttgtgtccaatttgtatgcagattataaaggatgcgtttttaacttcctgt
ggccatagtttttgctatatgtgtataatcactcaccttcacaacaagagtgattgcccc
tgttgttctcattatctcaccactagccaactctaccctaatttcctcctagacaagcta
ctgaagaagacatctggtcgtcagatttcaaaaactgcatctcctgttgaacaatttcgt
cattcattggaacagggttgtgatgtatcagttaaggagctggatgctctattgtcgatg
ttgtcagagagaaagaggaaattggagcaggaagaagcagagcgaaatatgcaaattctg
ctagacttcttacaaatgttaaggaagcaaaaagttgatgaactcaatgaggtgcaacat
gatctgcaatacatcaaagaggacataagtgcagtggagagacatagaatagacctatac
cgggctagggaccggtactcaatgaagcttcgaatgctagcagatgatccaattgggaaa
aaaccttggtcttcatccactgataggaactttggtggtcttttctccacttcatggaat
gcacctggaggattacctactggaaacttgacatacaaaatggtggaaggaaaagctcaa
ataagctctcctggaccacatagaaaagatacttctatcagcgaattgaattcacaacat
atgagtcaatcgggtctggctgtggtgaggaagaagcgtgtaaatgcacagttcaatgat
ctccaagaatgttacttgcaaaagagacgtctattggcgaacaaatcacatgttaaggag
gaaaaggacacagatgtcgtaaaaagagaaggttacagtgcaggactagaagatttccag
tctgtacttagcactttcactcgttatagtcggttaagagtcattgctgagcttcggcat
ggggatctttttcactcagccaatatcgtgtcaagcatcgaatttgatcgtgatgatgag
ttgtttgctactgctggagtttcacggcgcataaaagtttttgacttctcttcagttgta
aatgaacctgcagatgtgcattgccctgttgtcgaaatgtcaactcgttctaagctgagc
tgcttgagctggaataagtataccaagaaccacatagcaagtagcgattatgatggaata
gtaactgtatgggatgtgaccactagacagagtgtgatggaatatgaagagcatgagaaa
cgggcatggagtgttgatttttcacgcacagacccctcgatgcttgtatctggcagtgat
gattgtaaggtcaaagtttggtgcactaagcaggaagcaagtgttcttaatattgacatg
aaggcgaatatatgctgtgtaaaatataatcctggatccggtgtgcatatagcggttggc
tctgcggatcatcacatccattattatgacttaaggaacaccagccagccggttcacatt
tttagtggccatagaaaagctgtttcatacgtaaaatttttgtccaacaatgagcttgct
tcagcatcaacagatagtacactacggttgtgggatgtaaaagaaaatctgcctattcgc
acacttagaggacatacaaacgagaaaaactttgttggtctcacagtaaacaatgaattc
ctcgcttgtggcagtgaaacaaatgaagtatttgtgtaccataaggcaatctccaaacct
gtgacttggcatagatttggttccccagatgtggacgatgccgatgaagacgcaggatct
tatttcattagcgcggtatgttggaagagtgatagccctacgatgttagccgctaacagc
cagggaactataaaagtgctagtccttgcagcctga
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