Nicotiana attenuata (coyote tobacco): 109227116
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Entry
109227116 CDS
T05870
Name
(RefSeq) replication factor C subunit 5
KO
K10756
replication factor C subunit 3/5
Organism
nau
Nicotiana attenuata (coyote tobacco)
Pathway
nau03030
DNA replication
nau03410
Base excision repair
nau03420
Nucleotide excision repair
nau03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
nau00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
109227116
03410 Base excision repair
109227116
03420 Nucleotide excision repair
109227116
03430 Mismatch repair
109227116
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
nau03032
]
109227116
03036 Chromosome and associated proteins [BR:
nau03036
]
109227116
03400 DNA repair and recombination proteins [BR:
nau03400
]
109227116
DNA replication proteins [BR:
nau03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
109227116
DNA Replication Termination Factors
ELG1-RFC complex
109227116
Chromosome and associated proteins [BR:
nau03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
109227116
DNA repair and recombination proteins [BR:
nau03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
109227116
Check point factors
HRAD17(Rad24)-RFC complex
109227116
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac_C
AAA
DNA_pol3_delta2
Rad17
RCF1-5-like_lid
AAA_16
AAA_22
DUF815
AAA_assoc_2
AAA_5
AAA_11
ATPase_2
AAA_14
DNAX_ATPase_lid
AAA_24
RuvB_N
AAA_30
AAA_7
ResIII
AAA_3
AAA_19
AAA_28
bpMoxR
AAA_18
nSTAND3
Mg_chelatase
AAA_2
IstB_IS21
AAA_25
SLFN-g3_helicase
RNA_helicase
ABC_tran
DO-GTPase1
Motif
Other DBs
NCBI-GeneID:
109227116
NCBI-ProteinID:
XP_019247689
UniProt:
A0A1J6J537
LinkDB
All DBs
Position
6:complement(65146126..65150319)
Genome browser
AA seq
360 aa
AA seq
DB search
MSEPISLMDIDDDKIDPKPNKGKNIIFSGSTADPKAVPWVEKFRPQSLSDVAAHRDIVET
IDRLASGNRLPHLLLYGPPGTGKTSTILALARKLYGSQIHNMVLELNASDDRGIDVVRQQ
IQDFASTQSISFGAKSAVKLVLLDEADAMTKDAQFALRRVIEKYTRNTRFALICNNVNKV
IPALQSRCTRFRFAPLDAVHVSERLKHVIEAERLDVPEGGLKALVRLSNGDMRKALNILQ
STHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNEPFAISCKRISEIKTRKGLALVDIV
REVTMFVFKIKMPPNVRVQLINEMANIEYRLTFGCNDKLQLGSLIAAFTRARSALVAAAK
NT seq
1083 nt
NT seq
+upstream
nt +downstream
nt
atgtcggagccaatctcgttaatggatatcgacgacgacaaaatcgacccgaaaccaaac
aagggtaaaaacataatcttttcaggctcaacagctgacccgaaagcagttccttgggtc
gaaaagtttcgtcctcagtccctctccgacgtcgctgctcatcgcgatatagttgaaacc
attgataggctagcgagtggtaataggttgccgcatttgctgctatatggacctcctgga
actggaaagacatctacaattctcgcgcttgcgcggaagctatatgggtctcagatacac
aatatggttttggagctgaatgcatctgatgatcgtgggattgacgtggtgcgccagcag
attcaggattttgctagtactcagagcatctcctttggtgctaagtcagcagtgaagcta
gtactattggatgaggcagatgcaatgacaaaggatgcacagtttgccctgcgtcgagtt
attgagaaatatacaagaaacactaggtttgcactgatatgcaacaatgtcaataaggtt
attcctgccctacaatcacgatgtacacggtttaggtttgctccacttgatgcagttcat
gtatctgagcggctgaaacatgttattgaggctgaaaggcttgatgtccctgagggtggt
ttaaaggcacttgtacgactgagcaatggtgatatgcgaaaagctttaaacattctgcag
tcaacgcacatggcttctcagcagattacagaagaagctgtgtatctgtgcactggaaac
ccattgccaaaggacattgagcagatctcttactggcttctgaatgaaccctttgctatc
agttgcaaacgaatatcagaaatcaagacaagaaaaggattggctctggtggatatcgtg
agagaagtaaccatgtttgtcttcaaaattaagatgccgccaaatgttcgggttcagctg
atcaatgagatggctaatattgagtataggttgacttttggttgcaatgataagttgcag
cttggatcactgattgctgcttttacacgagcaagatctgcacttgttgcagctgcgaag
taa
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