Nicotiana attenuata (coyote tobacco): 109227277 Help Entry 109227277         CDS       T05870                                  Name (RefSeq) pre-mRNA-splicing factor SYF1   KO K12867   pre-mRNA-splicing factor SYF1 Organism nau  Nicotiana attenuata (coyote tobacco) Pathway nau03040   Spliceosome Brite KEGG Orthology (KO) [BR:nau00001]  09120 Genetic Information Processing   09121 Transcription    03040 Spliceosome     109227277  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03019 Messenger RNA biogenesis [BR:nau03019]     109227277    03041 Spliceosome [BR:nau03041]     109227277 Messenger RNA biogenesis [BR:nau03019]  Eukaryotic type   mRNA surveillance and transport factors    Transport factors     Other transport factors      109227277 Spliceosome [BR:nau03041]  Complex B   Other components    Prp19-related factors     109227277  Complex C     109227277 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  HAT_Syf1_CNRKL1_C HAT_Syf1_M HAT_Syf1_CNRKL1_N HAT_PRP39_N HAT_PRP39_C TPR_14 Suf Mad3_BUB1_I TPR_15 ARM_TT21_C TPR_19 ARM_TT21 Motif Other DBs NCBI-GeneID:  109227277 NCBI-ProteinID:  XP_019247926 UniProt:  A0A1J6IV51 LinkDB All DBs Position 1:complement(58315099..58323051) Genome browser AA seq 914 aa AA seqDB search MSIPKELYPSQDDLPYEEELLRNPFSLKLWWRYLVARADSPFKKRAVIYERALKALPGSY KLWHAYLRERLELVRNLPVTHSQFQTLNNTFERALVTMHKMPRVWIMYLVSLTEQKLVTR TRRTFDRALCALPVTQHDRIWEPYLVFVSQRGIPIETSLRVYRRYLKYDPSHIEDLLEFL LNSELWQEAAERLAGVLNDDQFYSIKGKTKHRLWLELCDLLTQHATEISGLNVDAIIRGG IKKFTDEVGRLWTSLADYYIRRKLVEKARDIFEEGMTTVVTVRDFSVIFDAYSQFEESML ALKMEEMSDSEVEDEESNGEVGVEEDVDEEDDRLNVAKLEKKLREFWLNDDKDVDLRLAR LEHLMDRRPELANSVLLRQNPHNVEQWHRRVKLFEGNPTKQILTYTEAVRTIDPMKAVGK PHTLWVAFAKLYENHKDIANARVIFDKAVQVNYKTVDHLASVWCEWAEMELRHRNFKGAL ELMRRATAEPTVEVKRRVAADGNEPVQMKLHKSLRLWLLYVDLEESLGTLESTRAVYERI LDLKIATPQIIINYAVLLEDHKYFEDAFKVYERGVKIFKYPHVKDIWVTYLSKFVKRYGK SKLERARELFEHAVEETPADAVKPLYLQYAKLEEDFGLAKRAMRVYDQATKAVPANEKLS MYEIYIARAAEIFGVPRTREIYEQAIESGLPDKDVKVMCLKYAELEKSLGEIDRARALYK HSSQFADPRSDPDFWNKWHEFEVQHGNEDTFREMLRVKRSVSASYSQTHFILPEYLMQKD QMQTLEEAKDVLKKAGVADDEMAALERQLVPPEDETKGKEQSRVVGFVSAGVVESNGQKV TTNNEDIELPEESDSEEEEKVEIAQKDVPAAVFGGLIRKREEGDEAEDDSAAKNKDSDGH LGALERIKRRRQGS NT seq 2745 nt NT seq  +upstreamnt  +downstreamnt atgtcaatccccaaagagctctaccctagccaagatgaccttccgtacgaggaagagctc ctccgcaacccgttcagcttgaaactgtggtggcgttatttagtggcacgagcagattcg ccattcaagaaaagagcagtgatttacgagcgagctctaaaagctctacccggaagttac aaattatggcacgcgtatctccgcgaacgcctcgaattagttcgaaatcttccagttact cactcacagttccaaaccctaaacaacactttcgagagagctctcgtaacgatgcacaaa atgccgcgagtttggatcatgtacctggtaagtttaactgagcaaaagctcgttacccga acccgacgcacttttgatagagcattgtgtgcgttgcctgttactcagcatgataggatt tgggaaccttatttagtgtttgttagtcaaaggggaattcctattgaaacttcacttagg gtttataggaggtacttgaagtatgacccttcacatattgaggatttgcttgagtttttg ttgaattccgagctgtggcaggaggcggccgagaggttagctggtgtattgaatgatgat cagttttattctattaaagggaagactaaacataggctctggttggagttgtgtgacttg ttaacacagcatgctactgaaatttcgggtttgaatgtggatgcgattattcgaggaggg attaagaagtttacggatgaggttgggaggctttggacatcattggcggattattacatt aggaggaagttggttgagaaggcgagggatattttcgaagaagggatgaccactgtggtc actgttagggattttagtgttatttttgatgcatactcgcaatttgaggagagcatgctt gccttgaaaatggaggagatgagtgacagcgaggtggaggatgaagagagtaacggtgag gttggggtggaggaagatgtggacgaggaggatgataggttgaatgtggcaaaattggaa aaaaagcttagagagttttggttaaatgatgataaggatgttgatttgagattagcgagg ctagaacatcttatggataggaggccggaactcgcgaatagtgtcctactaaggcaaaat ccacataatgtggaacaatggcatagaagggtaaaacttttcgaagggaatccgacaaag caaatattaacatacactgaggcagttagaactattgacccaatgaaggctgtgggaaag ccacatactttgtgggttgcatttgcaaaactttatgaaaaccataaggatattgcaaat gcaagagtcatctttgataaggcagttcaggtgaactacaaaactgtggatcatctggct agtgtttggtgtgaatgggcagagatggaactacgacacaggaatttcaagggtgctctg gaactgatgagacgtgccactgccgaaccaactgtggaggtcaagcggagagttgctgct gatggaaatgaaccagtgcagatgaagctacacaaatctctaaggctttggttattgtat gtggatttggaggagagtctaggaaccctagagtcaactcgtgcagtgtatgagagaatt ttggatctgaaaattgctacaccgcagattataataaactatgcagtacttctggaggac cataagtactttgaggatgcattcaaggtttatgagaggggtgtgaagatcttcaagtac ccacatgtaaaggatatatgggttacctatctttccaaatttgtgaagagatacgggaag tcaaagctggaacgagctagagagttatttgagcatgccgtggaagagacccctgctgat gctgtgaagccattgtatcttcaatatgctaaattagaggaagactttggtcttgccaag cgggctatgagggtgtatgatcaagctacaaaagctgttccagcaaatgagaaattgagc atgtacgagatttacatagcccgggcagctgagatatttggtgttccaagaacaagggag atatatgaacaagcaattgagtctgggcttccagacaaggatgtgaaagttatgtgctta aagtatgctgaactggagaagagcctaggagagatcgaccgtgcccgtgcactatacaag cactcatcacaattcgcagaccctagatcagaccctgatttctggaataagtggcatgag tttgaggtgcagcatggaaacgaggataccttccgcgagatgctccgtgtgaagaggagt gtatctgcaagctacagccagacacattttatcctacctgagtatctcatgcaaaaggat cagatgcagacccttgaggaagcaaaggatgtgttgaaaaaagctggtgttgctgatgat gagatggcagctcttgagaggcagttagtgcccccagaagatgaaacaaagggcaaagaa cagagtcgggtagttggatttgtaagtgcaggagtagttgaatcaaatggacagaaagtg acaacaaacaatgaggatattgagctacctgaggaaagtgactctgaagaggaagagaag gttgagattgcgcagaaggatgtccctgctgcagtttttggaggtttaatccgtaagagg gaagaaggtgacgaagcagaggacgactctgctgccaagaataaagatagtgatggtcat cttggcgctctagaaagaataaaacgaaggagacaaggctcttag

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