Nicotiana attenuata (coyote tobacco): 109227383
Help
Entry
109227383 CDS
T05870
Name
(RefSeq) SNF2 domain-containing protein CLASSY 1-like
KO
K10875
DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
Organism
nau
Nicotiana attenuata (coyote tobacco)
Pathway
nau03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
nau00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
109227383
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nau03400
]
109227383
DNA repair and recombination proteins [BR:
nau03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Rad54 family proteins
109227383
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
SAWADEE
Motif
Other DBs
NCBI-GeneID:
109227383
NCBI-ProteinID:
XP_019248072
UniProt:
A0A1J6ICH9
LinkDB
All DBs
Position
6:87046869..87054100
Genome browser
AA seq
1286 aa
AA seq
DB search
MKRQLHYNAHPIDPHPFEAFWYGSWHAVERLRISVGTITTHVLVNEEMIEENIPVTDLRI
RSRKATLSDCACFLRPGLDVCALSIPYQAEDSDNEKDVKPVWIDAKIRSIERKPHELTCT
CQFYVSVYVTQGPPPIVKKALSKEINMLHIDQIAILQRLEPKPCEDKHYRWSSSEDCNSL
QNFKLFIGKFSSDLTWLVAASVLKEAIFDVRSIHNQIVYEIVDDDLDKKEPNLDQLSYSV
NFKLENGVSTTTVVKFSRDIPVVNSTSDASEAGPLILYDPMGPRRSKRRFVQPERYYGCD
DDLTDFDVEMTRLVGGRRKVEYEELPLALSIQADHAYKNGEIEESIRSYERKLFGANIRP
QEKKSSESSAGWRNALKSDINKLADKKSVTADSQHQLAIVPLPPLGTDFIGDEHAPLDVE
VPEDVSAEIGEMVSRYIYFNGSSTSHNRNTSRMNFTKPEARRWGQVKISKLKFMGLDRRH
GGLGSHKKYKRNTSKKDSIYDIRSFKKGAVAANVYKELIRRCMANIDATLNKEQPPIIDQ
WKEFQSTKSGHRESAENVSANKEEEISEIDMLWKEMELALASCYLLDDSEDSHVQYASDV
RIGAEIRGEVCRHDYRLNEEIGIICRLCGFVSTEIKDVPPPFMPSANYSSSKEQRTEEAT
YHTQDEDGLDSLSIPASSNAPSSSGEGEDNVWALIPDLRNKLRVHQKRAFEFLWKNIAGS
VVPAEMEPESKKRGGCVISHTPGAGKTLLIIAFLVSYLKLFPGSRPLVLAPKTTLYTWYK
EVLKWKIPVPVYQIHGGQTYKGEVLREKMKLCPGLPRNQDVMHVLDCLEKMQMWLSQPSV
LLMGYTSFLTLTREDSPYAHRKYMAQVLTQCPGLLILDEGHNPRSTKSRLRKGLMKVNTR
LRILLSGTLFQNNFGEYFNTLTLARPIFVDEVLKELDPKYKKKNKGASRFSLENRARKMF
IDKISSVIDSDIPKKRKEGLNILKKLTGGFIDVYDGGSSDKLPGLQCYTLMMKSTTLQQE
ILVKLQNQRPIYKGFPLELELLITLGAIHPWLIRTTACSSQYFKEEELEALQQFKFDLKL
GSKVKFVMSLIPRCLLRKEKVLIFCHNIAPINLFLEIFERFYGWRKGIEVLVLQGDIELF
QRGRIMDQFEEPGGLSKVMLASITTCAEGISLTAASRVILLDSEWNPSKSKQAIARAFRP
GQDKVVYVYQLLATGTLEEEKYKRTTWKEWVSSMIFSEDLVEDPSHWQAPKIEDELLREI
VEEDRATLFHAIMKNEKASNMGSLQE
NT seq
3861 nt
NT seq
+upstream
nt +downstream
nt
atgaagaggcaattacattacaatgcccatccaattgatccacacccttttgaggcattc
tggtacggctcttggcatgctgtggagcgcctgaggatcagtgtagggaccatcactact
catgttctagttaatgaggagatgattgaggagaatattccggtaacagatcttcgaata
aggtctagaaaagctactttatctgattgtgcctgctttttacgacccggacttgatgtt
tgtgcgctttcaatcccttaccaagcagaagattcagataatgagaaagatgtcaagcct
gtatggattgatgcaaaaataagatcaatagagaggaagcctcatgagctcacttgtact
tgccaattttatgtcagcgtttatgtcactcaaggccctcctcccattgttaagaaagcc
ctaagtaaagagataaatatgctgcacattgatcagattgccattctccaaagacttgaa
cctaaaccttgtgaagataaacattatcgctggagttcttctgaggactgcaattcgttg
cagaattttaaactatttattggaaaattctcctctgacctcacatggttagtggctgca
tcggttctgaaagaagctatatttgatgtgagatcgatacacaaccagattgtctatgag
attgtggatgatgatcttgacaaaaaagaaccaaatctggaccaactttcttactctgtg
aatttcaagttagaaaatggagtttcaacaaccactgttgtgaaattcagtagggatatc
cctgtcgtaaattctaccagtgacgcaagtgaagctgggcctctgattctgtatgaccct
atgggcccacgaaggtcaaagcgtcgatttgtgcagccagagcgttactatggatgtgat
gatgatttgacagattttgatgttgagatgacacggttagttgggggtaggagaaaagtg
gagtatgaagaactaccacttgcactatctattcaagctgatcatgcttataagaatggt
gaaattgaagaaagtatcaggtcttacgagagaaagttgtttggagcaaatattagacct
caagagaagaagtcctctgaaagttcagctggatggagaaacgcactcaaatcagatata
aataagcttgcagacaagaaatcagttacagctgacagtcaacatcaacttgctattgtt
cccctgcctcctttgggaactgattttattggcgatgaacatgctccacttgatgtcgaa
gttcctgaagatgtgtctgcagagatcggtgaaatggtttccagatacatttatttcaat
ggctcttcaacatcgcataataggaacacttctaggatgaacttcacaaaaccagaggca
agacgctgggggcaagtcaaaatttctaagttaaaattcatgggacttgatcgtagacat
ggggggttaggttcacataagaagtacaaaagaaatacttcaaagaaggacagtatttat
gatataagatcattcaaaaagggtgctgtagcggctaacgtgtacaaggagttgataagg
aggtgcatggcaaacattgatgccacccttaacaaagaacaaccaccaataattgatcaa
tggaaagagtttcagtcaacaaaatctggccatagagaatccgctgagaatgtctcagcg
aataaggaggaggagatttcagaaattgatatgttatggaaggagatggaactagccctg
gcgtcatgttatcttcttgatgacagtgaggattcccatgttcaatatgcaagtgatgtc
aggataggagctgaaatacgtggagaagtttgtcgacatgattatcgacttaatgaagaa
atcggaattatttgccggttatgtggatttgttagcaccgaaataaaggatgttccacca
ccctttatgccttctgcaaactacagttcaagcaaggagcaaagaactgaagaagctaca
tatcacacgcaggatgaagatggccttgatagtttgtccattcctgcttcttccaatgca
ccctcatcatcgggagaaggggaagacaatgtctgggctttgatacctgatcttagaaat
aaattacgggtacaccaaaagagagcctttgaatttctgtggaaaaatattgctggatcc
gtagtacctgcggaaatggaaccagaaagcaaaaagagaggtggctgtgttatttctcat
actccaggagctgggaaaaccttgctaataattgccttccttgtaagctacctgaagtta
tttcctgggtcacggccattggtccttgctccaaagacaacactctacacctggtacaaa
gaagtacttaagtggaaaattcctgtgccagtctaccaaattcatggtggtcaaacctat
aagggagaggttttgagggaaaagatgaaattgtgtcctggtcttcctcgcaaccaggat
gtcatgcatgtcttggactgccttgaaaaaatgcagatgtggctttcgcaacccagtgtt
ctccttatgggctatacctcctttttaacactgacacgggaagattcaccttatgcgcat
aggaaatatatggcccaggtgttgacgcagtgtccagggctccttatacttgatgaaggg
cacaatccgagaagtacaaaatccaggttaagaaagggtctaatgaaggtcaatacacgg
cttaggattttgctttctggtacactattccagaataattttggggagtatttcaacaca
cttaccttagcaaggccaatctttgttgatgaggtcttgaaggagctggatcccaagtac
aagaagaaaaacaaaggtgcatctcgcttttcattggaaaatcgagcgagaaagatgttc
attgataaaatctcaagtgtcattgattcagacatccccaagaaaaggaaagaaggctta
aacatattgaagaaactcacaggtggattcatagatgtgtatgacggtggatcatccgat
aaactccctggtttacaatgctacaccttgatgatgaaatcaaccactcttcagcaagaa
attttggtgaagcttcaaaatcaaaggcccatctacaaaggatttccactggagttggag
ctgttgattacccttggcgcaatccatccttggttgatcagaacgacagcatgttctagc
cagtacttcaaggaagaggagctcgaggctcttcagcaattcaagtttgacctgaagttg
ggttcgaaagtcaaattcgtaatgagcctaatacctcgttgtctcctcaggaaagaaaag
gttttgatattctgccacaatattgctccaattaatcttttcctggagatatttgagagg
ttctatggttggagaaagggcatcgaagtactggtgcttcaaggtgacattgagcttttc
caaagaggaaggataatggatcaatttgaggagccaggaggactatcaaaggtaatgttg
gcatccattacaacttgtgcagaaggcattagtttgacagcagcatcacgtgtaatatta
ttggattcagagtggaatccttcaaagagcaagcaagccattgcacgggcttttcggcct
ggtcaggacaaagttgtgtatgtctaccagctcctagccacaggcacactggaagaggag
aaatacaaaagaacaacatggaaagagtgggtttcaagcatgatattcagtgaagacctt
gtggaggacccttctcactggcaagcacccaaaattgaagatgaattgttgagagagatt
gtcgaggaggatcgagctacattattccatgccattatgaaaaatgagaaggcttctaat
atgggaagtctgcaggaataa
DBGET
integrated database retrieval system
