KEGG   Nicotiana attenuata (coyote tobacco): 109227426
Entry
109227426         CDS       T05870                                 
Name
(RefSeq) uncharacterized protein LOC109227426
  KO
K11864  BRCA1/BRCA2-containing complex subunit 3 [EC:3.4.19.-]
Organism
nau  Nicotiana attenuata (coyote tobacco)
Pathway
nau03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:nau00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    109227426
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01002 Peptidases and inhibitors [BR:nau01002]
    109227426
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:nau04121]
    109227426
   03036 Chromosome and associated proteins [BR:nau03036]
    109227426
   03400 DNA repair and recombination proteins [BR:nau03400]
    109227426
Peptidases and inhibitors [BR:nau01002]
 Metallo peptidases
  Family M67
   109227426
Ubiquitin system [BR:nau04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   BRCC complex
    109227426
 Deubiquitinating enzyme (DUB)
  Ubiquitin-specific proteases (UBPs)
   JAMM
    109227426
   BRISC complex
    109227426
Chromosome and associated proteins [BR:nau03036]
 Eukaryotic type
  Centrosome formation proteins
   Microtubules and associated factors
    BRISC complex
     109227426
DNA repair and recombination proteins [BR:nau03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    BRCA1-A complex
     109227426
SSDB
Motif
Pfam: BRCC36_C JAB Prok-JAB UPF0172
Other DBs
NCBI-GeneID: 109227426
NCBI-ProteinID: XP_019248133
LinkDB
Position
6:89928993..89939069
AA seq 421 aa
MSLTSVKMTEEVWLTCLSHALSTETEEIMGLLLGDTQHSKNGSVTALIWAALPQPRCDRR
KDRVETNPEQLTAASVKAERMTLATGRTTRVIGWYHSHPHITVLPSHVDVRTQAMYQLLD
AGFIGLIFSCFSEDAQKVGRIQVIAFQSLDGKQQSHMLRPISLSPVHRSSVIDLESSLSS
ADTSRAGSKIESLEQDTGDSRAAALASKGGARSTDLGNFFANVDNRVGENLQANSLGNAI
LDVDPMDMSESMQEAMHRSNLEMSGAEYVRKEIPLLVLPSSSLLNLDAPLNSFTDLQRVL
FEEERTAYNQAVVTNMREGKAHPLTFIHHTSTYQASMCKLMEYCLSPAISALQDHLRENE
IRLKMLSEEAKVLETEIIKGEPNTSSPRRASASLGQRDLYSPTELSMKSVSGSGSRSRKA
S
NT seq 1266 nt   +upstreamnt  +downstreamnt
atgtcgctaacgagtgtgaagatgacagaggaagtgtggttaacatgccttagtcatgca
ttgtctactgaaactgaagaaattatgggccttctcctcggtgatactcagcactcaaaa
aatggtagtgttactgcacttatatgggcagcgctgccgcagccacgttgcgacaggcgg
aaggaccgtgttgagaccaatcctgagcagctgactgctgcatcagtcaaggctgagaga
atgaccttggcaacaggaagaacaacaagagtgattggctggtaccattcacatccccac
attacagtgcttccttcccatgtagatgtccgcacacaagccatgtatcaacttctggat
gctgggtttattgggttgatattttcatgttttagtgaagatgcacagaaggtcggaaga
attcaagttattgcatttcagtccctggatggaaagcagcagagtcacatgttgaggcct
atttctctttcccctgtacatagaagttctgttatagaccttgaatcatcattaagttcc
gcagacacatctagagctggttcaaaaatcgagagtcttgaacaagacactggtgattca
agggctgctgctttggcttctaagggtggggcaagatctacggacttgggcaatttcttt
gctaatgtcgataacagagttggagaaaaccttcaagccaacagtcttggtaatgcaatc
cttgatgtagatccaatggacatgtcagaaagtatgcaagaagcaatgcatcgatcaaat
ctggagatgagtggtgcagaatatgtcagaaaggaaatccctcttctggttctgccatcc
tcatctcttctcaatcttgatgcacctttgaactcattcacagatctgcaacgcgtatta
tttgaagaagaaagaactgcatataatcaggctgttgtaacaaatatgagggaaggaaaa
gcgcacccactcactttcattcatcatacatccacatatcaggcttctatgtgcaaatta
atggagtattgcttaagtcctgccatcagtgcccttcaggaccacttgagagagaatgaa
attcggctaaagatgctaagtgaagaagccaaggttttggagacggagatcataaaaggg
gaaccaaatacgagttctcctcgtagggctagtgcttcattgggtcaaagagacttgtat
agtccaaccgagttaagtatgaaaagcgtctctggttcaggtagccggagcagaaaagcg
tcttaa

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