Nicotiana attenuata (coyote tobacco): 109227481
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Entry
109227481 CDS
T05870
Name
(RefSeq) DNA mismatch repair protein MSH2 isoform X1
KO
K08735
DNA mismatch repair protein MSH2
Organism
nau
Nicotiana attenuata (coyote tobacco)
Pathway
nau03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
nau00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
109227481
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nau03400
]
109227481
DNA repair and recombination proteins [BR:
nau03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
109227481
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_I
MutS_II
PAXNEB
Motif
Other DBs
NCBI-GeneID:
109227481
NCBI-ProteinID:
XP_019248204
UniProt:
A0A1J6IEQ6
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Position
6:complement(93304702..93313977)
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AA seq
939 aa
AA seq
DB search
MNENLEEQGKLPELKLDAKQAQGFLSFFKTLPKDPRAVRLFDRRDYYTAHGDDATFIAKT
YYHTTTALRQLGNGADALSSVSVSRNMFETIARDILLERMDRTLELYEGSGSNWRLVKSG
TPGNLGSFEDILFANNEMQDSPVIAALAPNFGQNGCEVGLGYVDITKRVLGLTEFLDDSH
FTNLESALVALGCRECLVPAEIGKSSEYRPMLDAISRCGVMVTERKKTEFKGRDLVQDLG
RLVKGSVEPVRDLVSGFECASGALGCILSYAELLADESNYGNYAVKQYNLNSYMRLDSAA
MRALNVMESKSDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLLDVEEINCRLDVVQSF
VEDAALRQDLRQHLKRISDIERLTHNLERKRASLVHVVKLYQSSIRVPYIKSVLERHDGQ
FATLIRERYIDSLEKWSDDNHLNKFIGLVETSVDLDQLENGEYMISSAYDPNLSALKDEQ
ETLERQIHNLHKQTANDLDLPIDKSLKLDKETQFGHVFRITKKEEPKVRKQLNSHYIVLE
TRKDGVKFTNTKLKKLGDQFQKIVEEYKSCQKELVARVVQTAASFSEVFEGIAGVLSELD
VLLSFADLAASCPTPYTRPNISPPDTGDIILEGCRHPCVEAQDWVNFIPNDCRLVRGESW
FQIITGPNMGGKSTYIRQVGVSVLMAQVGSFVPCDNATISIRDCIFARVGAGDCQLRGVS
TFMQEMLETASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHIVEEIKAPTLFATH
FHELTALANKNGDNGHKQSAGIANFHVFAHIEPSNRKLTMLYKVQPGACDQSFGIHVAEF
ANFPPSVVALAREKASELEDFSPIAIIPNDIKEAASKRKREFDSHDMSRGTARARQFLQD
FVQLPLDKMDPNEVRQQLSKMKTDLERDAVDSHWLQQFF
NT seq
2820 nt
NT seq
+upstream
nt +downstream
nt
atgaatgaaaatttggaggaacagggcaagcttcctgagcttaaacttgatgctaagcaa
gctcaaggatttctctcattcttcaaaaccctacccaaggaccctagggcagttcgcctc
tttgatcgtcgggactattatactgctcatggagatgatgcaactttcattgcaaagaca
tattaccacacaacaactgctttacggcagttgggtaatggagctgatgccctttccagt
gttagtgtgagtagaaacatgtttgaaacaatagctcgtgacattctcttggagagaatg
gatcgtactcttgaactatatgagggcagtggttcaaactggagactggtaaaaagtgga
accccaggaaatcttggaagttttgaggatattctgttcgctaataatgaaatgcaagat
tctccggtgattgctgctcttgctccaaactttggtcagaatggatgtgaagttggctta
ggctatgttgatattactaagagagtccttggtttaacagaatttctagatgatagccac
ttcacgaatttggagtctgctttggttgctcttggttgcagagaatgtcttgtaccagcg
gagattggcaaatccagtgaatacaggcctatgctagatgcaatatccagatgcggcgtg
atggtaactgaaagaaagaaaactgaatttaaagggagagatttggtacaggatcttggt
aggctcgtgaagggttcagtagaacctgttcgagatttggtctctggtttcgaatgtgca
tcaggcgctttggggtgcatactttcttacgcagaactacttgcggatgagagcaattat
ggaaactatgcagtcaaacaatacaacctcaatagttacatgagattagattctgctgct
atgagagctctgaatgttatggagagcaaatcagatgctaataaaaattttagcttgttc
ggtctgatgaatagaacgtgtactgctggaatgggtaaaaggttattgcacatgtggctc
aaacagcctttactggatgtagaagagattaactgtaggctggatgtagttcagtcattc
gtggaggatgctgcgcttcgccaagatttgaggcagcatctgaaaagaatttcagatatc
gagcggctgacacacaatcttgagaggaaaagagccagtttagtgcacgttgtaaaactc
tatcagtcaagcatcagagtaccatatatcaaaagtgttttggaacgtcatgatgggcaa
tttgcaacactcatcagggaaaggtatattgattctctagagaaatggagcgatgataat
cacctgaataagttcataggtcttgtggaaacttctgttgaccttgatcaacttgagaat
ggagaatacatgatttcttctgcatatgacccaaatttatctgctctgaaggatgagcaa
gagacattggagcgacaaattcataatttgcacaaacaaactgccaatgatcttgatcta
cctattgataagtcgcttaaactagataaagaaacacaatttggacacgtcttcagaatt
accaagaaagaagaaccaaaagtcaggaagcagctaaattctcactacattgttcttgaa
acacgtaaggatggggtaaagttcaccaatacaaaactcaaaaaactaggagatcagttc
cagaagattgtagaggagtacaagagctgtcagaaagaattggtagctcgtgtagttcaa
acagctgcgagtttctccgaggtgtttgaaggtatagctggtgtactttctgagttggat
gtgctactgagttttgctgatttggctgccagttgcccaactccctacacaagaccaaat
atcagtccaccagatacaggagatattatacttgaagggtgtaggcatccttgtgtggaa
gctcaagattgggttaacttcattcctaatgactgtagactagttaggggagagagttgg
tttcagattatcacaggtcctaacatgggtggaaagtcgacctacattcggcaggttggt
gtgagtgtcctgatggcccaagttggctcgtttgttccatgtgacaatgctaccatttct
attcgtgattgtatttttgctcgtgttggtgctggagattgccagctgagaggggtttct
acttttatgcaagagatgcttgagactgcatctatcttgaaaggagctactgatagatca
ttgattataattgatgagttgggccgtgggacatcaacctacgatggctttggtttagct
tgggctatttgtgagcacatagttgaagaaattaaagcaccaacattgtttgccactcac
tttcatgagctgactgcattagccaacaagaatggagacaatggacataagcaaagtgct
gggatagcaaattttcatgtttttgcacacatcgaaccttctaatcgcaagctaactatg
ctttacaaggttcaaccaggtgcttgtgatcagagttttggtattcatgttgctgaattt
gcaaattttccaccaagtgttgtggccctggctagagaaaaggcatctgagttggaggat
ttctctcctattgccataattccaaatgacattaaagaggcagcttcgaaacggaagaga
gaatttgactcccatgacatgtctagaggtactgccagagctcggcaattcttacaggat
ttcgttcagttgccactagataagatggatccaaacgaagtcaggcaacagttgagcaaa
atgaaaaccgacctggagagggatgcagttgactctcactggcttcagcaatttttttag
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