Nicotiana attenuata (coyote tobacco): 109228167
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Entry
109228167 CDS
T05870
Name
(RefSeq) sm-like protein LSM1B
KO
K12620
U6 snRNA-associated Sm-like protein LSm1
Organism
nau
Nicotiana attenuata (coyote tobacco)
Pathway
nau03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nau00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109228167
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nau03019
]
109228167
Messenger RNA biogenesis [BR:
nau03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
109228167
mRNA degradation factors
5'-3' decay
Lsm complex
109228167
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Hfq
Motif
Other DBs
NCBI-GeneID:
109228167
NCBI-ProteinID:
XP_019248888
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Position
6:8233253..8235769
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AA seq
129 aa
AA seq
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MSSSDSSEYNLFSSSLASYLDRKILILLRDGRKLLGMFHSFDQYANIVLEGTSERVMVGN
LYCDIPLGLYVIRGENVVLIGERESTEEELLPHMTCVSVAEIKRAQKADKDAAELKGSMR
KRMEFVDFD
NT seq
390 nt
NT seq
+upstream
nt +downstream
nt
atgtcttcgtcagactcatcagaatacaacttattctcttctagccttgcaagttatctt
gatagaaagattctaatattactgcgagatggcagaaaactcttgggaatgttccattct
ttcgatcaatatgcaaatatagtattggaaggtacctctgaacgagtaatggttggaaat
ctctattgcgacatacctttgggtctctacgttattcgtggggagaatgttgtgctcatc
ggagaacgggagtctaccgaggaggagcttttgccacacatgacttgtgtgtccgttgca
gaaatcaaaagggctcaaaaggcagacaaggatgcagcagaacttaagggttccatgaga
aagagaatggaatttgttgactttgactag
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