Nicotiana attenuata (coyote tobacco): 109228350
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Entry
109228350 CDS
T05870
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 24
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
nau
Nicotiana attenuata (coyote tobacco)
Pathway
nau03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
nau00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109228350
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
nau03041
]
109228350
Enzymes [BR:
nau01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
109228350
Spliceosome [BR:
nau03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
109228350
Complex B
109228350
Complex C
U2 SnRNP specific factors
109228350
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
109228350
NCBI-ProteinID:
XP_019249049
UniProt:
A0A1J6J6L7
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All DBs
Position
1:69912083..69917611
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AA seq
778 aa
AA seq
DB search
MSKRKFGFEGFGINKQTTYNFERNQAPQRLYVPPSSRSGGSHDNYEDTDLDNIEYEEHDA
VGEDNKNDGGGGGGGGAEDDEIDPLDAFMEGIHEEMKAAPPPKPKEKLDKYKDDVEDDPM
ESFLRAKKDVGLQLAAEALNAGYNSDEEVYAAAKAVDAGLVEYDSDDNPIVVDKKKIEPI
PALEHSEIDYEAFNKDFYEEKPSISGMSDPEVNEYRSSLAIRVSGFDVPRPVKTFEDCGL
SVELMKAISKQGYEKPTPIQCQALPIVLSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPE
LQKEEGPIGVICAPTRELAHQIFVEAKKFSKSHGIRVSAVYGGMSKLDQYKELKAGCEIV
VATPGRLIDMLRKKAFTMLRATYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSAT
MPRKVEKLARETLTDPIRVTVGEIGMANEDITQLVQVIPSDAEKLPWLLEKLPVLIDNGD
VLVFASKKATVDEIESQLAQKGFRVAALHGDKDQVSRMETLQKFKSGVYHVLIATDVAAR
GLDIKSIKSVVNYDIAKDMDMHVHRIGRTGRAGDKDGTAYTLITQKEARFAGELVNSLVA
AGQTVSIELMDLAMKDGRFRSKRDARKGGGKRAKGRGGGSNKGVRGVDFGLGIGYNAESN
NPPQNAAPSRSAAVNSLRTGMMAQFKSNFVAASSNSQNQGMNNTAGAYPNKGMVLQGFVS
GGTIGGESNASRISSTFTAATPGAYSSSQPARDGADQKSSESSKERSRERRRPSGWDR
NT seq
2337 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaagagaaaattcggattcgaaggatttggaataaataagcaaacgacgtataac
ttcgagcgaaatcaagctcctcagcgactgtacgtcccgccgtcgtcacgctccggcggt
agccacgacaattacgaagacaccgacttagataacatcgagtacgaagaacacgatgcg
gtcggagaggacaacaaaaatgatggtggaggaggaggcggcggcggcgccgaagatgat
gagattgatccgctcgatgcatttatggaagggattcatgaggaaatgaaggcggcgccg
cctccgaagccgaaggagaagctggataagtataaggatgatgtagaggatgatccgatg
gagagttttttgagagcgaagaaggatgtagggttacaattggctgctgaagctcttaac
gctggttataattcggacgaggaggtttatgctgcggcgaaggctgttgatgcaggattg
gttgagtatgactcggatgacaatcctattgttgttgataaaaagaagattgaacctatt
cctgctttggaacatagtgagatcgactatgaggctttcaacaaggacttttacgaggaa
aagccttctatttcaggtatgagcgatccggaagttaatgaatataggtcaagcttggca
attcgtgtatcaggctttgatgttccaaggcctgttaagacatttgaagactgtggtctt
tctgttgagttgatgaaagctatcagtaaacagggatatgaaaagcctacaccaatacag
tgtcaagcattgccaattgtgctctctgggagagatattattggcattgctaaaactggg
tccggcaagactgctgcttttgtgcttcctatgattgtccacattatggatcagcctgaa
cttcagaaagaagaaggtcccattggagttatttgtgcacctactagggaattagcacat
caaatatttgtggaggcaaagaaattttctaaatcgcatggtatccgtgtctctgcagtt
tatggaggaatgtctaagttggatcaatacaaagaactaaaggcaggatgtgagattgtt
gttgctactccagggaggttgatagatatgcttagaaagaaggcatttacaatgttgagg
gcaacttacctagtacttgatgaggctgatcggatgtttgaccttggttttgagcctcag
ataaggtccattgtcggtcaaattagacctgatcgtcaaacattgctcttttcagcaact
atgcctcgcaaagttgaaaagcttgccagagaaacattgacagatcctataagagttacc
gtgggagagattggcatggctaatgaggatattacacaattagttcaagtgattccttcg
gatgctgaaaaattgccttggcttttggaaaagctccctgtactgatcgacaatggtgat
gttcttgtctttgcttcgaaaaaggcaacagtggatgagattgaatctcaactggctcaa
aaggggttcagagttgcagctctccatggtgacaaggatcaagtttctcgtatggagaca
ctgcaaaagtttaaatctggcgtatatcatgttcttatcgcaactgatgttgctgcccgt
ggtcttgacatcaaatcaattaagtcagtggtgaactatgacatagctaaagacatggac
atgcatgttcacagaattgggagaacaggtcgtgctggtgacaaagatgggacagcctac
actctcattacacagaaggaagcgcgttttgctggtgaactggtgaacagtttggttgct
gccggtcaaactgtttccatcgaactaatggaccttgctatgaaggatgggaggttccgg
tccaaaagggatgcaaggaaaggaggtggaaaaagggcgaaaggaaggggaggaggaagc
aataagggtgtacgaggtgtggattttggtctaggtattggatacaatgctgaatcaaat
aaccctccccagaacgctgctccaagccgttctgcagcagttaattccctgaggacaggc
atgatggcacaatttaaaagtaactttgttgctgcatcatcaaattctcaaaatcaaggg
atgaataacacagctggtgcgtatccgaacaagggaatggtcttacaaggcttcgtctct
ggtgggacaataggtggagaaagtaatgcttcccgtattagttccacatttactgctgct
acacctggtgcatattcttctagtcagccagctagagatggagctgaccagaagagttca
gagagttcaaaagagaggtctagagaaagacggaggccttctggttgggatcgttga
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