Nicotiana attenuata (coyote tobacco): 109228580
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Entry
109228580 CDS
T05870
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH6-like isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
nau
Nicotiana attenuata (coyote tobacco)
Pathway
nau03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nau00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109228580
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nau03019
]
109228580
03012 Translation factors [BR:
nau03012
]
109228580
Enzymes [BR:
nau01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
109228580
Messenger RNA biogenesis [BR:
nau03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
109228580
Translation factors [BR:
nau03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
109228580
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
R3H
DEAD
HA2_C
HA2_N
ATPase
Ank_2
nSTAND3
AAA_19
Ank_5
AAA_22
ResIII
AAA_7
ABC_tran
Rad17
AAA_23
NPHP3_N
AAA_16
Sigma54_activat
NACHT
Motif
Other DBs
NCBI-GeneID:
109228580
NCBI-ProteinID:
XP_019249262
LinkDB
All DBs
Position
7:4740235..4750512
Genome browser
AA seq
1210 aa
AA seq
DB search
MASTATGASPSSSGFGKKRQKKGQRQQEVTNVAESTRIRVAQVLEQFRASNDEVYTFESN
LSNRDRAAVHMLCRKMGMKSKSSGRGDQRRISIFKTKNTVETLEGKDALSCFKFFGEAKD
VLQDLFTRYPPDNGETSELAVGKHSKKVDKYRGNKDDMFCKPAMNKSEIAKRVESLASRI
ENTPNLRQITVQRSKLPIASFKDVITSTVESNQVVLISGETGCGKTTQVPQFILDHMWGK
GETCKIVCTQPRRISATSVSERISAERGESVGDTVGYKIRLESRGGKHSSIVFCTNGVLL
RILVTKGSASFNKKAPRKMGTNDISDITHIIVDEIHERDRYSDFMLAILRDLLPSYPNLR
LVLMSATLDAERFSKYFGGCPVIRVPGFTYPVKTFYLEDVLSIVKSTENNHLDSTSTTAM
SEESTLTEEYKIALDEAISLAFSDDDLDPLLDLISSDGGPEVFNYQHSLSGVTPLMVFAG
KGCIGDICMLLSFGADCHLRANDGKSALDWAERENQKEAAELIKKHMEKSSSNCEEQHLL
DKYLSTVDPELIDDVLIEQLLRKICIDSEDGAILVFLSGWEDINRTRERLRSSQYFKDTS
KFSVIALHSMVPAVEQKKVFRRPPPGCRKIVLSTNIAETAITIDDVVYVIDSGRMKEKSY
DPYNNVSTLQSSWVSKASAKQREGRAGRCQPGICYHLYSKLRAASLPDFQVPEIKRIPIE
ELCLQVKLLNPDCKIEEFLKKTLDPPVYETIRNAIIVLQDIGALSVDEKLTELGERLGSL
PVHPLTSKMLLIAILLNCLDPALTLACASDYRDPFTLPMLPNEKKRASAARAELASWYGG
RSDQLAVVAAFEGWKSAKESGQESRFCSTYFISSSTMNMLSGMRKQLQSELLRNGFIPGD
GSSCSLNAQDPGILHAVLVAGLYPMVGRLLPPLKGGKRAVIETAGGDKVRLHPHSTNFKL
SFKKFFDRPIIVYDEITRGDGGLHIRNCSVIGPLPLLLLATEIVVAPGNEEDDDDDDDND
DDGSDYEDADEDDGEEDNIKADQGEKVMSSPENTVKVIVDRWIPFKSTALDVAQIYCLRE
RLAAAILFKNVMQVSHPGKVLPENLAASVYAMACILSYNGMAGISSLLEPVDSLTTMVGA
TEIGQPDRGSYNGMDMNPNNSLSSPMYHGQHQRSYTPHQRGGIHISKGSFMHGGGTMKRD
HPKRQRGNGS
NT seq
3633 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcaacagctacaggagcttcaccatcatcatctgggtttggtaaaaagaggcaa
aagaaagggcaaagacaacaagaggttacaaatgttgcagaatccactcggattcgggtc
gcccaagttcttgaacagttccgtgcttctaatgatgaagtgtatacattcgaatcaaac
ctttcaaatcgcgacagagctgcagttcatatgttatgccggaaaatgggtatgaaatcc
aaaagttctgggcgtggggatcaacgtcgtatatctattttcaagactaaaaatacagtg
gagacactggaaggaaaggatgcactaagttgttttaaattttttggagaagcaaaagat
gttctacaggatttatttacaagatatccacccgataatggggagacaagtgaactagca
gttgggaaacacagtaagaaagttgataaatatcgaggaaataaggatgatatgttctgt
aaacctgcaatgaacaagtctgaaattgcaaaaagggtggagtcacttgcttcaagaata
gaaaataccccaaacctgagacagattacagtacagaggtctaagcttccaattgcttcc
ttcaaggatgtcattacatcaacagttgaatctaatcaggtggtcttgatctctggtgaa
actggatgcggaaaaactacacaggtcccccaatttattttggatcatatgtggggtaaa
ggtgagacatgtaaaattgtatgtactcagccccgacgaatttctgccacatcagtttct
gagagaatctctgctgaaagaggcgaaagtgttggcgacactgttggttacaagatacgg
ctggaaagcagaggtgggaagcactcatcaattgtgttttgtaccaatggggttctactg
aggatcctggttaccaaaggaagtgccagcttcaacaagaaagctcccaggaaaatgggc
acgaatgacatttctgatataacccacatcattgtggacgaaattcatgaaagggatcgc
tactccgatttcatgctcgcgattctcagggacttgcttccgtcatatccaaatttgcgt
ctggttctgatgagtgctacacttgatgctgaacgcttttcaaaatactttggcggctgc
ccagttatccgagtcccaggatttacttatcctgtaaaaacgttttatcttgaggatgta
ctttctattgtaaagtcaactgaaaataatcaccttgattccacctcaaccactgccatg
tccgaggagtcaacattaactgaggagtacaaaattgccttagatgaagcaattagtttg
gctttttcagatgatgatcttgatccccttttagatctaatatcttcggacgggggacca
gaagtgttcaattatcagcattctttgagtggagtgacaccattgatggtgtttgctgga
aaaggctgtattggtgacatttgcatgctcctctcttttggtgctgactgccatttacgt
gctaatgatggaaaaagtgctctagattgggctgaacgggagaatcagaaagaagctgct
gaactaattaaaaaacacatggagaaatcatcttccaattgtgaggagcagcatttactt
gacaaatacctatcaacagttgaccctgaactgattgatgatgtccttattgagcaacta
ttaagaaaaatatgtatagactcagaggacggagcaatccttgtttttctctctggttgg
gaggatattaacagaacacgagagagattacgctcaagccagtacttcaaagatacgtct
aagttttcagtaatcgctctccattctatggttccagctgtggagcaaaagaaggtcttt
agacgccctccaccaggctgccgcaaaattgttctttcaactaatattgctgaaactgcc
attaccattgatgatgttgtttatgtaatagacagtggacgaatgaaagaaaaaagttat
gacccttataataatgtatcaacgcttcaatcttcttgggtctcaaaagctagtgcaaag
caaagagagggtcgtgctgggcgctgccagccaggaatttgttatcatctttattcaaaa
ctccgagcagcttcattgcctgatttccaggttcctgagattaagaggattcctatagag
gaattatgtcttcaggtcaagcttcttaaccctgattgcaagatagaagaatttctgaag
aagacacttgaccctccggtttacgagaccatacgtaatgcaatcattgttctgcaagat
attggggcgttatcagttgatgagaaacttacagagcttggtgaaaggctagggtcttta
ccagttcatcctcttacaagcaagatgctgttaattgctatattattgaactgccttgat
ccagcattgacgttggcctgtgcttctgactatagagatccatttaccctacctatgttg
ccaaatgagaagaagagagcttcagctgcaagagccgagttagcctcatggtatggtgga
agaagtgatcaattagcagttgtggctgcatttgagggctggaaaagtgcgaaagaaagt
ggccaagagtcgaggttttgttctacgtactttatatcctcaagtactatgaacatgtta
tcaggaatgcgtaaacaactgcaatctgaactcttgaggaatgggtttattccaggagat
ggatcttcctgtagccttaacgcacaggatccaggcatattacatgctgttcttgttgct
ggtttgtaccctatggttggaagactgcttccgcctctgaaaggtggtaagagggctgtc
atagagactgcaggtggcgataaagttcgattgcaccctcattctactaactttaagctt
tcattcaaaaaattctttgatcgaccaataattgtatatgatgagataacacgtggtgat
ggaggtcttcatataaggaactgtagtgtcattgggccactcccacttttgttgctggca
acagagattgtagtggctcctggaaatgaagaagatgatgatgatgatgacgacaatgat
gatgatggaagtgattacgaagatgctgatgaggacgatggtgaggaagataatattaaa
gcggatcaaggagagaaagttatgtcttctcctgaaaatacagttaaggtcattgttgat
aggtggattcctttcaagtcgacagctcttgatgttgctcaaatttactgcctgagagag
cgattagctgcagcaattttattcaagaatgttatgcaggtctcacatcctggaaaagtt
cttcctgagaatcttgcagcctctgtatatgcaatggcttgcatcctctcgtacaatggg
atggcaggtatctcatcgctgctggagcctgtggactcgcttactacaatggtcggtgct
actgagattggtcagcctgatcgtgggagttataatggaatggatatgaatcccaacaat
tctctcagttcacctatgtaccacggccagcatcagcgctcctatacacctcatcaaaga
ggcggcattcatatatcaaagggatcgttcatgcatggaggaggaaccatgaaaagagat
catcctaaacggcagcgtggaaatggatcttga
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