Nicotiana attenuata (coyote tobacco): 109229031
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Entry
109229031 CDS
T05870
Name
(RefSeq) poly(A)-specific ribonuclease PARN isoform X1
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
nau
Nicotiana attenuata (coyote tobacco)
Pathway
nau03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nau00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109229031
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nau03019
]
109229031
Enzymes [BR:
nau01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
109229031
Messenger RNA biogenesis [BR:
nau03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
109229031
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
109229031
NCBI-ProteinID:
XP_019249878
UniProt:
A0A1J6IS55
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Position
7:complement(45876365..45881725)
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AA seq
718 aa
AA seq
DB search
MKKQCMLKPLSTILIQISHAPITSFTTHRRALSSSSSSSFALKNVTKSNFESALKDLRGL
VRDADFVAVDLEMTGVTSAPWRDSFEFDRYDIRYLKVKDSAEKFAVVQFGICPFRWDSHK
QSFLAHPHNFYIFPRQEIPGSNQSYEFLCQTASLDFLAKYQFDFNVCVREGVSYLSRSQE
EEAVERINSTFMDESSDSVYGLREDAEFPLVRMADVLFAERMKNTIREWHASLLSKGSSS
SEIKQMSTDPNQRFQMVFFKTRPALALSGFTSRQLRVIKAVTKKHFKDLAFIRVAGEATS
PQQLIVYTDSNDDKDLLMKEVKEGLRKEAEIKVKSAVGFRHVIDLLSSERKLIVGHNCFL
DMAHIYSKFIGPLPLTAEDYVSSIQKYFPCIIDTKVLLNANGVFQQSVNKSSTSLSRAFV
SICPQIALGVKTSGLADRPCVEVEVQVDEKRSLNWNSGAKHEAGYDAFMTGCIFAQACNH
LGIDFTLHVLAGGLPKETKLQNYINRLYLSWVTGDIIDLSTGKCTTDTSASSNLKSRYQE
ISFPSIVLLWGLPSKLKAREIKACIVKVFGPNSISSVYHLDESAVFIQFSKPELVSKFLE
IKETLSRNSDPISVLHPLSDILNADCTHAANYDVYQQICSSPISKKLFADQAEAVGIKHK
TVSSRAEGKKKGNQVFGKENEVRLFDEKVDDMMSSSYGYSETDRSADSSYLDEALVSK
NT seq
2157 nt
NT seq
+upstream
nt +downstream
nt
atgaagaaacagtgtatgttgaaacctctatccacaatcctaatccaaatatcccacgct
ccgatcacctctttcactacgcaccgccgcgccctctcttcctcttcttcctcttccttc
gcgctcaagaatgttaccaaatccaacttcgaatcagctctcaaggacctacgaggtctt
gtacgcgacgccgatttcgtcgctgtcgatttggaaatgaccggagtaaccagtgctcct
tggagagattccttcgaattcgaccgatatgatattcgttacctcaaagttaaggactcc
gccgagaagttcgccgttgttcagttcggcatttgtcctttccgttgggactctcacaag
caatcctttctcgcgcatccacataacttttatatattcccacggcaagaaatccctggt
agcaaccaatcctatgagttcctttgccagacagcctcacttgatttcctggcaaaatac
cagtttgatttcaatgtgtgcgtacgtgaaggagtctcttatttatccagaagccaagaa
gaggaagcagtggaacgtataaattcaacattcatggatgaatcatcggattccgtgtat
ggcttgagagaagatgcagagtttccattggttaggatggcagatgttctatttgctgaa
agaatgaagaacacaataagggaatggcatgctagtttgttaagtaagggaagcagtagc
tctgaaattaaacaaatgtcaactgatccaaaccagagatttcaaatggttttcttcaag
acccgtccagcccttgcccttagtgggtttacttcgcgccagctaagggtgattaaagcg
gtcactaaaaagcatttcaaagatctagcctttatcagagtagctggcgaagcaacatct
ccgcagcaattgattgtctatacagattccaatgatgacaaggatctactgatgaaagag
gtgaaggaaggccttcgtaaagaagcggaaataaaggtcaaatctgctgttggatttcga
catgttattgatcttctttcctcggagcggaagttgattgtcggacacaattgctttctt
gatatggcgcatatatacagtaaattcattggtccactacctttgactgctgaggactat
gtgtcttccattcagaagtactttccttgcataattgacaccaaagtactcttgaatgca
aacggtgtttttcaacagagtgtgaataaaagcagcacatcactatccagagcgtttgtc
tctatctgtcctcaaattgctttaggtgtcaaaacttctggtttggctgatagaccgtgt
gtagaggtggaggttcaagtagatgaaaaaagatccttgaactggaactcaggggccaag
catgaagctggctatgatgcatttatgactggatgcatttttgcacaggcgtgcaatcat
ctaggcattgattttaccctccatgtgcttgctggaggtttacccaaggagacaaagctt
cagaattatatcaatcgcctttaccttagctgggttactggagacatcattgatctaagt
actgggaaatgtacaacagacacctcagcttcgagtaacctcaaaagtcggtaccaggag
atttcctttcctagcattgttttgttgtggggattaccatcaaaactaaaagcaagggag
atcaaagcttgtatagtaaaagtctttggcccaaattctatttcctctgtctaccatttg
gatgaaagcgctgtctttattcagtttagcaagccagaactggtttctaagtttctggaa
ataaaggaaactctaagtaggaacagcgatccaatttcagtgttgcatcctctttcggat
attctgaatgccgactgcactcatgcagctaactatgatgtgtatcaacaaatatgcagt
tcacccatctcaaagaaattatttgcagatcaggctgaagctgttggtatcaaacacaaa
actgtatcatccagggcagaagggaaaaaaaagggaaaccaggtatttggcaaagaaaac
gaagttaggctgtttgatgagaaagtagatgatatgatgagttcatcatatggttattct
gaaacggatagatctgccgattcttcttatctcgatgaagctctggtgagcaaatag
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