Nicotiana attenuata (coyote tobacco): 109229449
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Entry
109229449 CDS
T05870
Name
(RefSeq) uncharacterized protein LOC109229449
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
nau
Nicotiana attenuata (coyote tobacco)
Pathway
nau03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nau00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109229449
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nau03019
]
109229449
03400 DNA repair and recombination proteins [BR:
nau03400
]
109229449
Enzymes [BR:
nau01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
109229449
Messenger RNA biogenesis [BR:
nau03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
109229449
DNA repair and recombination proteins [BR:
nau03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
109229449
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RQC
HTH_40
HRDC
RecQ_Zn_bind
ResIII
Cas3-like_C_2
HAD_2
zf-CXXC
Motif
Other DBs
NCBI-GeneID:
109229449
NCBI-ProteinID:
XP_019250433
UniProt:
A0A1J6IKP9
LinkDB
All DBs
Position
7:complement(89477860..89490844)
Genome browser
AA seq
912 aa
AA seq
DB search
MHSTLKKYFGYTEFRPYQKEIIEKILDGKDCMVVMATGSGKSLCYQVPPLISEKTALVIS
PLISLMQDQVMALKQRGIKADYLSSAQTDRGVQTNAELGHYDVLYMTPEKACALPNSFWS
RLLKAGMCLLAVDEAHCISEWGHDFRVEYKQLDKLRNVLLNVPFVGLTATATEKVRSDIM
NSLQMKDPHVAIGSFDRKNLFYGVKSFSRSSQFVDQLVEEISKYVDNANSTIIYCTTVKD
TEEIFKSLHEAGIKAGIYHGQMANKAREEAHRSFIRDEFYVMVATVAFGMGIDKPNIRYV
IHYGCPKSLESYYQESGRCGRDGIPSVCWLYYTRSDFAKADFYSAEARSAAQRKAIMEAF
SAAQHYCMLSTCRRKYLLDYFADKYAHDDCGNCDICTSSMKEKDLSREAFLLMACIQSCG
GRWGLNLPIGILRGSRTKKIVDAQFDKLPFHGLGKELSANWWKGLAYQLISRDYLVETFK
DMYKTVSVSEKGLQFLRSSSPDHQPPLFLPETPEMDLDEKNRDTPNEVSEIDGLASKEFE
GVSQAETQLYKMLIEERIKLARATGTAPYAVCGDQTLKRISLTRPSTKARLANIDGVNQH
FIKLYGDNFLQSIKRLSEACNLSLDGDSSSQTSVPSKIVTVPSSKKLTPAKFEAWKMWHE
DGLTFKEIANFPGRAAAIKEQTVLEYILEAAREGYKMNWTRFCEETGLTRETFLSIQNAV
SKVGKEKLKPIKTELPEEVSYGQIKAYLTMHEAGVSAEVFSSNYEQSCNGDECSNDISEI
LQNVPSDVQGDDGIVEAPVVTGTKGASPGKTEGAEYHLLTETNRKEAASSEGDLLIPTKR
QRVEAAEVKSFRTLDATEESILSWLKNFDDGVTLSDLLEHFNGATEKSLFDLLSYLEGEF
LIYRKNNLYKLM
NT seq
2739 nt
NT seq
+upstream
nt +downstream
nt
atgcattcgactcttaagaaatattttgggtacacagagtttcgaccttatcagaaggag
attattgagaaaattttagatggaaaggactgtatggtggtaatggccaccggtagtggc
aagtcattgtgctatcaggttcccccattgatctccgaaaagactgctttagttataagt
cctctcatttctttgatgcaagatcaggtgatggcgttgaagcaaagggggattaaagct
gactatctttcaagtgctcagactgatcgtggggtgcagacaaatgctgagttgggtcac
tatgacgttctgtatatgactccggaaaaggcttgtgcgcttcctaacagtttctggtca
agattgctgaaagctgggatgtgtctgttggctgttgatgaagcacactgcatttcagaa
tggggtcacgatttcagggtggagtataaacagttagacaagctgcgtaatgttcttttg
aatgttccatttgttggcttaacagcaactgctacagaaaaagttcggagtgacattatg
aactccttgcagatgaaagaccctcatgttgctattggctcatttgatcgcaaaaatctt
ttctatggagtcaaatcttttagtcgtagttctcaatttgttgatcagctggtggaggag
atctctaaatatgtggataacgcaaattcaacaataatatattgtacaactgtcaaagac
actgaagagatcttcaaatcacttcatgaggcaggaatcaaagctggaatctaccatggg
caaatggctaataaagcacgtgaggaggctcataggtcatttatcagagatgaattctat
gtcatggttgcaactgttgcttttggcatgggtatagataaaccaaacataaggtatgtg
atacactacggctgcccaaagagcctggagtcttactaccaggaaagtggacgatgcggc
agagatggtattccttcagtttgctggctttactacacaagaagtgacttcgcaaaagct
gatttctactctgcagaagctcgttcagcagctcaaagaaaagctattatggaagcattt
tctgctgcacaacattactgcatgctgtcaacttgtagacgaaaatatttgttggattac
tttgcggataagtatgcccatgatgattgtggaaactgtgatatttgcactagctcaatg
aaggaaaaggacttgtcccgagaagcatttcttcttatggcctgtattcagtcatgtgga
ggccgttggggcttgaatctgcccataggcattcttcgtggatctcgaaccaagaaaatt
gttgacgctcagtttgataagcttccatttcatggtcttgggaaggagttatctgcaaat
tggtggaagggactggcttaccaattgatttcacgtgattatttggtagaaaccttcaaa
gatatgtacaaaactgtgagtgtcagtgaaaagggtttgcagtttctaagatcaagcagc
cctgatcatcaacctccactgtttttgccggagactcctgaaatggatcttgatgagaaa
aatagagatacacccaatgaagtgagtgaaatcgatggtttggcttcaaaggaatttgaa
ggagtttcacaagctgaaactcaattgtacaaaatgcttatagaagagagaattaagctt
gccagagctactggaactgctccgtatgcagtctgtggagaccaaacattgaaaaggata
agcttgaccaggccttctacaaaagcaagactagctaatatagatggtgtcaaccagcat
ttcataaaactgtatggggataattttcttcaaagcattaagcgtctatcagaagcttgc
aatctttctttggatggggattcaagcagccaaacctctgttcccagtaagattgtcacg
gttccaagcagtaaaaaattaacaccagcaaaatttgaagcatggaagatgtggcatgag
gatggtcttacgttcaaagaaattgctaattttcctggtagagcagcggcaataaaggaa
caaactgtgctagagtatatactcgaagctgcacgagagggatacaaaatgaattggacc
aggttttgtgaggagactgggctgacaagagagacattcttgagcatccagaatgctgtc
tcaaaagttggtaaggaaaaattgaagcccatcaaaactgagttaccagaagaggtaagt
tatggtcagataaaggcatacttgacgatgcatgaggcaggagtatcagctgaagtattt
tcatccaattatgagcaaagttgcaatggagatgaatgttcgaatgacatatcagaaata
ctacagaacgttccatctgacgtgcagggagatgatggcatagttgaagcacctgttgtc
actggtacaaagggtgcttctcctgggaagactgaaggagcagaatatcatctcctgact
gagacgaacaggaaagaagctgcatccagtgaaggtgatttgctcattcctacaaaacgc
caaagggtcgaagcagcagaagtcaaaagttttaggactctggatgccacagaagaatcc
atattgagctggctcaagaactttgatgatggggtcaccctttctgatcttttggagcac
ttcaacggggccactgaaaaatctttatttgatctgcttagttaccttgaaggtgagttt
ttgatatataggaagaacaacctgtacaagcttatgtaa
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