Nicotiana attenuata (coyote tobacco): 109229687
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Entry
109229687 CDS
T05870
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 2
KO
K14402
cleavage and polyadenylation specificity factor subunit 2
Organism
nau
Nicotiana attenuata (coyote tobacco)
Pathway
nau03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
nau00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
109229687
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nau03019
]
109229687
Messenger RNA biogenesis [BR:
nau03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
109229687
U7-dependent histone pre-mRNA processing factors
109229687
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Lactamase_B_6
Beta-Casp
CPSF100_C
RMMBL
Lactamase_B
Lactamase_B_2
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-GeneID:
109229687
NCBI-ProteinID:
XP_019250761
UniProt:
A0A1J6IRF5
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All DBs
Position
7:complement(109204313..109217695)
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AA seq
739 aa
AA seq
DB search
MGTSVQVTPLCGVYNENPLSYLVSIDGFNFLIDCGWNDQFDTSLLQPLSRVASSVDAVLL
SHPDTFHLGALPYAMKQLGLSAPIYATEPVYRLGLLTMYDQYLSRKQVSEFDLFTLDDID
SAFRDVTRLTYSQNHYMSGKGEGIVIAPLVAGHLLGGTTWRITKDGEDVIYAVDFNHRKE
RHLNGTVLESFVRPAVLITDAFNALNNQPSRRQRDQEFLDAIDKTVNVGGNVLLPVDTAG
RVLELILTLEQHWTQKQLSTPIFFLSYVASSTVDYAKSFLEWMSDSIAKSFEHTRDNAFL
LRKIKLVINKSGLEEVPGPKVVMASMASLEAGYSHDIFVEWAADPKNLVLFTERGQFGTL
ARILQSNPPPKAVKVTMSRRIPLVGEELAAYEEEQNRIKREEALKATLVKEEESKAPIGV
EVITGDPMVIDANVTHASSNAAGPYSGAFKDVLIDGFVPPSSSVAPMFPFYDNTSEWDDF
GEVINPDDYVIKDDNMEQSSMHVDGDLNGNLDEGSANLILDSTPSKVVSSELTVQVKCSL
LYVDFEGRSDGRSIKSILAHVAPLKLVLVHGSAEATEHLKQHCLKQVCPHVYAPQLEETI
DVTSDLCAYKVQLSEKLMSKVLFKKLGDYEIAWVDAEVGKTENGMISLLPLSGPAPPHKT
VLVGDIKMSDFKQFLASKGVQVEFAGGALRCGEYVTIRKVGDASQKVGGAAIQQIVLEGP
LSEEYYKIREYLYSHFYSL
NT seq
2220 nt
NT seq
+upstream
nt +downstream
nt
atgggaacgtcggttcaggtgacgccactctgcggagtgtacaacgagaaccctctctct
tacctcgtctctatcgacggtttcaatttcctcatcgattgtggctggaatgaccaattt
gatacttctcttcttcagcccctttccagggtggcttcaagtgtggatgctgtattgcta
tcacaccctgatacatttcatcttggtgctttgccctatgctatgaaacaacttggtctt
tccgctcctatttatgctacagaaccagtgtacagactagggttactaactatgtatgat
cagtatctctcacggaagcaagtttcagagtttgatctattcactttggatgacattgat
tctgcattccgagatgtgaccagattaacctactctcaaaatcattacatgtctggaaaa
ggagaagggattgttattgctccattggtagctggtcatctgttgggaggtactacatgg
aggataacaaaagatggggaggatgtcatatacgctgttgacttcaatcaccgtaaagaa
agacatctgaatggaactgttttagagtcttttgtccgtccagctgttctaataacggat
gcctttaatgctttaaacaatcaaccctctaggcgccaaagggaccaagagtttctagat
gccatagataaaactgtaaatgttgggggaaatgtattacttcctgttgatactgctggt
agagttttggagctcatcttgacgttggaacagcactggacgcaaaagcagttgtcgact
cccatcttcttcctctcatatgtagcatcaagtactgttgactatgcgaagagtttcctt
gagtggatgagcgattcaattgcaaaatcttttgagcacactcgggataatgcttttcta
ttaaggaaaattaagctcgtgattaacaagagtggtcttgaagaagttcctgggccaaag
gttgttatggcttccatggccagtttagaagctggatattcgcatgacatctttgttgaa
tgggcagctgatccaaagaatcttgttctgttcactgaaagagggcagtttggcacattg
gcacgcattcttcagtcaaatccacctcctaaagctgttaaagttactatgtcaaggaga
attcccttggttggtgaggagttagccgcttatgaggaggagcaaaacaggataaaaagg
gaagaagctctcaaagctactcttgttaaagaggaggaatcaaaagcccctattggggtc
gaagtcatcactggtgacccaatggtcattgatgccaatgtcacacatgcttcctccaat
gctgctggtccatacagtggtgctttcaaggacgtcttgattgatggatttgttccacct
tcatctagcgtagctccaatgttccctttctatgataacacctccgagtgggatgacttt
ggtgaagtcatcaatccagatgattatgtgatcaaagatgacaacatggagcagtcgtca
atgcatgttgatggagatctaaatggaaaccttgatgaaggatcagcaaatctaatcctt
gattcaacaccctcaaaagttgtttcttcagagttaacggtacaagtcaagtgttcctta
ttatacgtagattttgaaggtcgttcagatggccgctcaatcaaatcaattcttgctcat
gttgcgcccttaaagcttgtattggtgcatggatcagctgaagccactgagcatctgaag
caacattgtctgaaacaagtttgtccgcatgtttacgctccccagttagaagaaacaatt
gacgtcacttcagatttgtgtgcttataaggtccaactttctgagaagctaatgagcaaa
gtgctctttaagaagcttggagactatgaaatagcatgggttgatgctgaagtggggaag
acagaaaatggcatgatctctttacttcctctctcgggacccgctcccccgcataaaaca
gttctcgttggagatattaaaatgtctgatttcaagcagtttctcgccagcaagggcgtg
caggtagagtttgctggtggtgctttacgttgcggggagtatgtgaccattcgcaaagtt
ggagatgctagtcaaaaggttggaggtgctgccattcagcagatcgtgctcgaaggtcca
ttatctgaagagtactataaaattcgagaatacctatattcacatttttattccctctaa
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