Nicotiana attenuata (coyote tobacco): 109229942
Help
Entry
109229942 CDS
T05870
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH2 isoform X1
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
nau
Nicotiana attenuata (coyote tobacco)
Pathway
nau03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
nau00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109229942
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
nau03041
]
109229942
03009 Ribosome biogenesis [BR:
nau03009
]
109229942
Enzymes [BR:
nau01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
109229942
Spliceosome [BR:
nau03041
]
Complex A
U2 snRNP components
U2 related factors
109229942
Complex B
109229942
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
109229942
Ribosome biogenesis [BR:
nau03009
]
Eukaryotic type
90S particles
Helicases
109229942
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
Helicase_C
DEAD
AAA_22
AAA_19
ABC_tran
ResIII
nSTAND3
SRP54
AAA_30
T2SSE
FtsK_SpoIIIE
Flavi_DEAD
AAA_7
PhoH
UvrD-helicase
SLFN-g3_helicase
AAA_29
TsaE
NACHT
RsgA_GTPase
Motif
Other DBs
NCBI-GeneID:
109229942
NCBI-ProteinID:
XP_019251029
UniProt:
A0A1J6JNK2
LinkDB
All DBs
Position
1:84797352..84802528
Genome browser
AA seq
722 aa
AA seq
DB search
MGTERKRKVSLFDVVDETPAKKVNVGSVNGSMTPSINKWNGKPYSQRFYEILEKRKTLPV
WHQKEEFLQALKSNQTLILVGETGSGKTTQIPQFVLDAVEVETADKRRKYMIGCTQPRRV
AAMSVSRRVAEEMDVAIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMADPLLERYKV
IILDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAEKFQGYFFGAPLMKVPGRL
HPVEIFYTQEPERDYLEAAIRTVVQIHTCEPPGDILVFLTGEEEIEDACRKINKEVSNLG
DQVGPVKVVPLYSTLPPAMQQKIFESAPPPVVEGGPAGRKIVVSTNIAETSLTIDGIVYV
IDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTEKSFHNDLQP
QTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALDDEGNLT
RLGEIMSEFPLDPQMAKMLVVSSEFNCSNEILSISAMLSVPNCFVRPREAQKAADEAKNR
FGHIDGDHLTLLNVYHAYKQNSEDPQWCYENFINQRALKSADNVRQQLSRIMARFNLKLC
STDFNSRDYYVNIRKAMLAGYFMQVAHLERTGHYLTVKDNQVVHLHPSNCLDHKPEWVIY
NEYVLTSRNFIRTVTDIRGEWLVDIAPHYYDLANFPQCEAKRVLERLYKKREREKDEGKS
KR
NT seq
2169 nt
NT seq
+upstream
nt +downstream
nt
atgggaacggagcggaagaggaaagtaagcttgtttgatgtggtggatgagacgccagcg
aagaaagtgaatgttggaagcgtgaacggtagcatgacgccgtcgattaataagtggaac
gggaagccttactcacagagattctatgagatattggagaaaaggaagactcttccggtt
tggcatcaaaaggaggagtttttacaggctttaaaatctaatcaaaccctaattttggtt
ggtgaaaccggtagtggtaaaaccactcagattccgcagtttgttttagatgctgttgaa
gttgagacggctgataagcgccggaagtatatgattggttgcactcaacctcggagggtg
gctgcaatgtccgtgtctcgtcgagttgctgaagagatggatgttgcaattggggaagaa
gttggatatagcatccgttttgaagactgcagtagtgctagaactgttttgaaatactta
acagatggtatgcttttaagagaagcaatggcagatcctctattggaacgctacaaagta
atcattctggatgaagcccatgaaagaactttggcaacagatgtcctgtttgggcttctt
aaagaggtgctgaaaaatagaccagacctaaagcttgttgttatgagtgccacacttgag
gcagagaagtttcagggttacttctttggtgcgcctctcatgaaagtgcctggaaggctt
catcctgtggaaattttctacactcaggagcctgagagagattatctcgaggctgccatt
cggaccgtggtgcagatacacacttgtgaacctcctggtgacatacttgttttccttacc
ggagaagaggagattgaagatgcttgtcgcaaaatcaataaggaggttagtaatttgggt
gatcaagtgggcccagttaaagtggtacctctttattctacacttcccccagctatgcag
caaaagatatttgaatcagccccacccccggtggtggagggtggtcctgctggcaggaag
attgttgtgtcaaccaacattgcagagacatctttgacaattgatggcattgtgtatgtc
atagatccgggatttgctaaacaaaaagtttataacccaagggtgcgtgttgaatctttg
ttggtgtctcctatttcgaaggccagtgcccaccagagatcaggacgtgctggaaggacg
cagccagggaaatgctttagactttacacagagaaaagtttccataacgaccttcaacca
cagacctatccagaaatacttcggtcaaatttggctaatacagttctaactttgaagaag
ttaggtattgatgacctggttcattttgattttatggatcctcctgccccagagacgttg
atgagagcactggaggttttgaattacttgggagcattggatgatgaagggaacttgact
aggttgggtgagattatgagtgaatttcctcttgatcctcagatggcaaaaatgcttgtt
gtcagctcagaattcaactgctccaatgaaatcctctcaatatccgccatgctatcagta
cccaattgctttgtccggcctagggaggctcagaaagctgcagatgaagcaaagaatcgg
ttcggtcatatagatggggatcatttgacgttgctgaatgtgtatcatgcctacaagcag
aactcggaagaccctcaatggtgctacgagaatttcatcaatcagagggctctcaaatca
gctgacaatgtgaggcaacagctttctcgcataatggccaggttcaacctcaagttatgc
agcacggacttcaacagtcgcgactactacgtaaacataagaaaggctatgttagctgga
tatttcatgcaggttgctcacctagagcgtactgggcactatctgactgttaaagacaat
caagtggttcacttgcatccttcaaattgcctggatcataagccagaatgggttatctat
aatgaatacgtcttgacaagcaggaatttcatccgtactgtgactgatattcgtggtgaa
tggttggttgatattgcaccacattactatgaccttgcgaactttccgcagtgcgaggca
aaacgagttcttgagcggttatacaagaagcgagagcgagaaaaagatgaaggcaagagc
aaaagatga
DBGET
integrated database retrieval system
