Nicotiana attenuata (coyote tobacco): 109230217
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Entry
109230217 CDS
T05870
Name
(RefSeq) ATP-dependent RNA helicase DBP2-like
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
nau
Nicotiana attenuata (coyote tobacco)
Pathway
nau03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
nau00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109230217
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
nau03041
]
109230217
03009 Ribosome biogenesis [BR:
nau03009
]
109230217
Enzymes [BR:
nau01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
109230217
Spliceosome [BR:
nau03041
]
Complex A
U1 snRNP components
U1 related factors
109230217
Complex B
109230217
Ribosome biogenesis [BR:
nau03009
]
Eukaryotic type
Pre-60S particles
Helicases
109230217
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
ResIII
SNF2-rel_dom
DUF4436
Motif
Other DBs
NCBI-GeneID:
109230217
NCBI-ProteinID:
XP_019251286
LinkDB
All DBs
Position
7:complement(85248033..85255906)
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AA seq
402 aa
AA seq
DB search
MSYVPPHLRNSSAGKTTTLNSNGAGADYFSSKRSSHQSRIHCNGELDKSSSNGYSNSSRR
SSVNYSTASRTAIPDPEFPQWKPSERVLRLKSEQIEEIRLRLNVDVNVAPGSSSAPAPIE
SFPDMCLHPSIMKDIEKHGYTAPTSIQAQSMPVALSGRDLLGCAETGSGKTAAFSIPMIQ
HCLAQQPLQRGDGPLALVLAPTRELAQQIEKEVTAFSLSLDSFKTAIVVGGTNISEQRSE
LRAGVHIVVATPGRLIDHLQQGNTSLCRISFVVLDEADRMLDMGFEPQIREVMRNLPEKH
QTLLFSATMPTEIEALAQDYLTNPVRIKVGKVSSPTANVSQNLEKVPENDKIDRLLDLLV
EEAAQSERSGHPFPLTIVFVERKEVLWFKARSDPEATFGRQQ
NT seq
1209 nt
NT seq
+upstream
nt +downstream
nt
atgtcttatgtacctcctcacctgagaaattcttctgccggcaaaaccaccactctgaac
agtaacggcgccggcgccgattacttctcatcaaaacgcagctcgcatcagtccagaatt
cattgcaatggcgagcttgacaagtcctcgtccaacggatactctaattcatctcgccgg
agctccgttaattactcgacggcatcgagaacggccatccctgaccctgagtttccccag
tggaagccttccgaacgagttctccgtcttaaatccgagcagatagaagagattcgatta
aggcttaacgttgatgtaaatgttgccccaggctcaagttctgcacctgcacctattgaa
tcatttcctgatatgtgcttgcatcctagcatcatgaaggatattgaaaagcatggctac
actgcaccgacttctattcaggctcaatccatgccagttgctcttagtggaagagatctc
ttgggttgtgctgaaactggtagtgggaagaccgccgcgttcagcatacctatgatacag
cactgtttggctcaacaacctcttcaacgtggtgatggacctttggcattagtgttggcg
cctacgagagagcttgcacaacaaatagagaaagaggttacggctttcagcctgtcactg
gattcctttaagaccgcaattgttgtaggtgggacaaacattagtgaacagaggtctgaa
cttcgagcaggggtacatatagtggttgctactccaggaagacttatagatcatttacag
caaggaaatacttccctctgcaggatctcttttgttgttttggatgaggctgatagaatg
cttgatatggggtttgaacctcagataagagaggtgatgcgaaatcttccagaaaagcat
caaacactgctcttcagtgccaccatgccgacagaaattgaagcattggcacaggattac
ttgactaatccagtgcgaataaaagttggaaaagttagcagcccgactgcaaatgtttcc
cagaatttagagaaggtacctgaaaatgataagattgaccgacttttggatttgttggtt
gaggaggcagctcaatctgaaagatctggtcatcccttccctttgaccattgtatttgtg
gaaaggaaggaagttctgtggtttaaggccaggagtgatccagaagcaacttttggacgg
cagcagtag
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