Nicotiana attenuata (coyote tobacco): 109230835
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Entry
109230835 CDS
T05870
Name
(RefSeq) enhancer of mRNA-decapping protein 4-like
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
nau
Nicotiana attenuata (coyote tobacco)
Pathway
nau03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nau00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109230835
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nau03019
]
109230835
Messenger RNA biogenesis [BR:
nau03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
109230835
mRNA degradation factors
5'-3' decay
Decapping complex
109230835
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EDC4_C
Ge1_WD40
WD40_WDHD1_1st
WD40
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
Beta-prop_TEP1_C
WDR55
Beta-prop_EML_2
Beta-prop_Vps41
Motif
Other DBs
NCBI-GeneID:
109230835
NCBI-ProteinID:
XP_019251832
UniProt:
A0A1J6I3Q4
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All DBs
Position
8:complement(7644438..7655112)
Genome browser
AA seq
1421 aa
AA seq
DB search
MASAGNPNQPGGVPFDMHKFFNPSTPPPPTSTNPNPQNPINPTLISSPFPLPSASYPPPT
AGGGGGGSGGLYYPTHTTTPFHHIPQFNPHIPTQYAPQQQDGHLHPQRSMSFPTPPLQPP
TPTSPHQFLNPNPNPNHGARLMALLSAPPSSTLEVSSQQPSTLQIIPPLQPTTSGSELSD
FSASPNVGPGPVRMQSTKLPKGRHLNGENVVYDIDARLPGEVQPQLEVTPITKYGSDPGL
VLGRQIAVNKSYICYGLKLGAIRVLNINTALRSLLKGLAQRVTDMAFFAEDVHLLASASV
DGRVYIWKITEGPDEEDKPQITGKIVIAIQIVGEGESVHPRVCWHCHKQEILVVGIGKHV
LKIDTTKFGKAGVFSADEPLRCPVDRLVDGVQLVGTHDGEVTDLSMCQWMTTRLVSASVD
GTVKIWEDRKPLPIAVLRPHDGNPVNSATFLTAPHRPDHIILITGGPLNREMKIWVSASE
EGWLLPSDADSWHCTQTLELKSSEARAEEAFFNQVVPLSQAGLLLLANAKKNAIYAVHLE
YDLNPMATHMDYIAEFTVTMPILSFTGTSDLLPHGEQIVQVYCVQTQAIQQYALDLSQCL
PPPMENVVGFERTESSVSCDAARIEGYAPVDPPGSKQMEFPLTSSAPKSSVNESVTKIVA
TTRPPMTEARTALATSMEFASSTVESKSASLPSITTDTDIAPFASPPPLSPELARKLSGF
RSTSNSSEHAPSINDHVGDPKVGEYSVDRQMDAIHPNLSGLTSSDGDPRNNDDEVSRDDG
SSGVGNPIKFKHPTHLVTPSEILMANSSSEVNHVNEQKSEGESSIQDVVINKEARNVEVE
VKVGETRFNQKTDIGSQEELHTFVSENKEKAFCSQASDLGIEMARECHALSPETYIVEES
RQFDGACGTERLTQPSTAPEEDHDSAKEISGSDLDSNVQVSVHQLSAPSTKGKKQKAKNT
QGFRPSSPSPSAFNSSESIEGGVSSSNTSMEAAFSQILSMHEMLNQLLNMQKETQKQMGM
MVAVPVTKEGRRLEAALGRSMEKAVKANSDVLWARFQEESAKQENSLRDRTQQITNMISN
CFNKDMPGLIEKIMKKELAAVGQAVTRSIAPTVEKAVSTAISEAFQKGVSDKAVNQLERT
VSSKLEASVARQIQAQFQTSGKQALQETLKSTLEASVIPAFEMSCKAMFEQVDLTFQKGF
AEHTAAALQQFESMHSPLALALRDAINSASSMTQTLSGELADGQKKLLTLAVSGANSNSP
NPLISHMSNGPLLHEKLEAPVDPTKELSRLLAERKYEEAFTAALQRSDVSIVAWLCSQVD
LPGILSMNPLPLSQGVLISLLQQLACDVSKETARKLSWMRDVLTAINPTDPMIAVHVRPI
FEQVYQILIHHRNLPTTTPAELSSIRLIMHVINSMLMTCSK
NT seq
4266 nt
NT seq
+upstream
nt +downstream
nt
atggcttccgccggaaatccaaaccagcccggcggagtaccgtttgatatgcataaattc
ttcaatccttcaactcctccaccgccaacttcaacaaaccctaatccccaaaatcccatt
aaccccactttgatttcttccccatttccacttccttcagcttcttatcctccgcccacc
gccggcggaggcggtggtggtagcggaggactgtactatccaactcatacaacaaccccg
tttcaccatatccctcaattcaatccccatatccctacacaatacgcacctcaacaacaa
gatggccatttgcatccccaaagatccatgtctttccctacacccccacttcaaccacct
actcctactagtcctcaccaatttttgaaccctaaccctaaccctaatcatggggcgaga
cttatggctttgttaagtgcaccaccttcttcaactctagaagtttcttctcagcaaccc
tccactttgcaaattattcctcctttacagcctacaacttctgggtctgagctttctgat
ttttctgcttcaccaaatgttgggcctggtccggtccggatgcagagtactaagttgcct
aaagggaggcatttgaatggggagaatgttgtttatgatatagatgctaggttgcctggt
gaagtgcagcctcagctggaggttactccaattactaagtatggctcggatccgggcctt
gttttgggccggcaaattgcagttaacaaaagctatatatgttatggactcaaattggga
gctattcgagtgcttaatattaacactgccttgagatcattgcttaaaggtcttgcacag
agggtcacagacatggctttctttgctgaagatgttcaccttttggctagtgcaagtgtt
gatgggcgtgtttacatatggaaaattactgaaggaccagatgaggaagataagccccaa
attacagggaagattgtcattgctattcaaattgttggtgaaggggaatctgttcatcct
cgagtttgttggcattgtcacaaacaagaaattcttgtggttggaatcggaaaacatgtt
ctaaaaattgataccacaaaatttggaaaagctggagttttttcagcggatgaacctcta
aggtgtcctgttgacaggttggttgatggggtacaacttgttggtactcatgatggagaa
gtaactgatttgtcaatgtgccagtggatgaccactcgattggtatctgcttctgtggat
ggcacggttaagatttgggaagaccggaagccactaccaattgcagttctcaggcctcat
gatggtaatcctgttaattcagctaccttcctgactgctccacaccgcccagaccacatc
atactcatcactgggggtccacttaatcgagaaatgaagatatgggtatcagcaagtgaa
gaaggctggttgcttcctagtgatgctgattcatggcactgtacacaaacgttagagttg
aagagttctgaagctcgtgctgaagaggcattttttaaccaagttgtacccttgtctcaa
gcaggtctgctcttactagcaaatgcaaaaaagaatgcaatatatgctgttcatctagag
tatgacctgaacccaatggcaacccatatggattacatagctgaatttacagttacaatg
ccaattttgagtttcactgggacaagtgatttactgcctcatggtgaacagattgttcaa
gtgtattgtgtgcagacacaggctattcagcagtatgctttggacttatcccaatgcttg
ccacctcccatggagaatgtggtgggcttcgaaaggacggaatctagtgtttcatgtgac
gctgctcgtattgaaggatatgctcctgttgatccccctggcagtaaacaaatggagttt
cctttaactagttctgcacccaaatcttcagtgaatgagagtgtcaccaagattgtagct
acaacaagacctcctatgactgaagcacgcactgccttggccacctctatggaatttgct
tcttccaccgtggaatctaaatcagctagtttgcccagtataactactgatactgatatt
gccccctttgcatcaccaccgcctttgagtcctgagttggctagaaaactttctggtttc
agaagcacatcaaacagctctgagcatgctccctctatcaatgaccatgttggggatcct
aaagtgggtgaatattcagttgataggcaaatggatgccattcatccaaacttgtctggt
cttacttcgtcggatggtgacccaaggaataatgatgatgaagtgtcacgtgatgatggt
tcttcaggtgttggtaatccaattaagtttaagcacccgactcatctggtgactccttca
gagatattgatggctaactcatcctctgaggtaaaccatgttaatgagcagaaaagtgag
ggagaatcgagtatccaggatgttgtaatcaacaaggaagcccgcaatgtggaggtggaa
gttaaagttggtgaaacaagattcaatcaaaaaactgatattggctctcaagaagaactt
catacttttgtgtcggaaaacaaagagaaagccttttgctctcaggcatctgatcttgga
atagaaatggctcgagaatgtcatgccttatcgcctgaaacttatattgtcgaggaatct
aggcagtttgatggggcttgtggaactgagcggctgacccaaccgtcaactgccccagaa
gaagatcatgactcggccaaggagatctctggaagtgatttagactcaaacgtgcaagtt
tctgtgcatcaactttcagctcctagcaccaaaggaaaaaagcaaaaggcgaagaacact
caaggatttagaccatcttcaccctcgcctagtgctttcaactcatctgaatccatcgag
ggtggtgtcagctcaagtaacacctctatggaagctgcattctcacaaattttgtccatg
catgagatgctaaatcagcttcttaatatgcaaaaagaaacacaaaagcagatgggtatg
atggtcgctgttcctgttaccaaagaaggaagaagactcgaggctgccttgggacggagc
atggagaaggctgtcaaggccaattccgatgtcttatgggctcgtttccaagaagagagt
gcaaaacaagagaactcacttcgtgatcgtactcaacaaataaccaatatgatatctaac
tgctttaacaaggacatgccggggctaattgagaaaataatgaagaaagaactggcagct
gttggacaagccgtcacacgcagtattgcccctacagttgagaaagctgtatcaactgct
atttcagaagccttccagaaaggagttagtgacaaggcagtgaaccaactggagagaaca
gttagctccaaactcgaagcttctgttgctaggcaaatccaagcgcaattccaaacctct
ggcaagcaagctcttcaggaaactttgaaatctacattggaagcttcggtgatccctgcc
tttgagatgtcatgcaaagcaatgtttgagcaagtagatttgacgtttcagaaaggattt
gctgagcacactgctgctgctctacaacaatttgagtccatgcattcaccattagcactt
gctttaagggatgccattaattccgcatcatcgatgactcaaacattgagtggagagtta
gctgatggtcaaaagaagttgcttactcttgcagtttctggagctaattccaattcacca
aatccactgattagccacatgagtaatggaccattactgcatgagaagcttgaggctcct
gttgatccaaccaaagagctatctagattgttagcggaacgcaagtacgaggaagcattc
acagcagcgttgcaaagaagtgatgtgtctattgtagcatggttatgttctcaggttgat
ttaccaggtattttgtcgatgaatcctctccctttgagtcaaggagtacttatttcgctt
cttcagcagttggcctgcgatgttagcaaggaaacagcccgaaaactgtcctggatgagg
gatgtgctaaccgccataaatccaactgatccaatgattgcagtgcacgtgcggcctatc
tttgagcaagtatatcagatactaatccatcatcggaatcttcctaccacaacccctgct
gaactttcaagcattcggctgattatgcatgtcatcaactcgatgctgatgacctgtagt
aaatga
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