Nicotiana attenuata (coyote tobacco): 109231038
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Entry
109231038 CDS
T05870
Name
(RefSeq) tetratricopeptide repeat protein SKI3
KO
K12600
superkiller protein 3
Organism
nau
Nicotiana attenuata (coyote tobacco)
Pathway
nau03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nau00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109231038
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nau03019
]
109231038
Messenger RNA biogenesis [BR:
nau03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
109231038
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_1
TPR_2
TPR_11
TPR_16
TPR_8
TPR_14
TPR_17
TPR_12
TPR_7
TPR_9
TPR_6
ARM_TT21_C
CFAP70_TPR_C
TPR_19
TPR_NPHP3
Y2_Tnp
TPR_10
Motif
Other DBs
NCBI-GeneID:
109231038
NCBI-ProteinID:
XP_019252112
UniProt:
A0A1J6IFT9
LinkDB
All DBs
Position
8:complement(21213084..21235874)
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AA seq
1172 aa
AA seq
DB search
MSEEDDAIRRLEEAVVDNPSLHFDLGVLLWDKGGDIQEKAAQHFLIAAKLNPQNGAAFRY
LGHYYARVAVDSQRALKCYQRAVNLNPDDSIAGEEICNILDGSGKESLEIAVCREASEKS
PRAFWALCRLGYLLVNQKKWSEAVQSLQQAIRGYPTCADLWEALGLSYQQMGMFTAAVKS
YARAIELEESRVFALVESGNVHLMLGSFRKGIEQFRQALLISPLNLSAHHGLASALLSLA
KESIDSGAFKWGASLLEEASKVALASTSIVGNVSCSWKLHGDIQLIYAKCFPWMDERLGS
GADEKSFSSSILSWRRNCCLAARSACRSYQRALHLSPWQANVYTDVAIASELLLSLKENC
KDDINSWFVSEKMCLGGLLLEGCNSEFWVALGCLSDHSALKQHAFIRALQLDVSLAVAWA
HLGKLYRLEGESQLAQLAFDRARSIDPSLSLPWAGMSADADARNLKPDEAYECCLRAVQI
FPLAEFQTGLVKLALQSGYLRSSEAFGAIQQALQRAPQYPESHNLKGLVCEARGDYESAV
ASYRLARLAARVFAGRVSKSYPADISINLTRSLCMAGNADAAIQECKYLENKGLLDVEGL
QLYALSYWKLGKYDLALSVAKRLASSTLPTEHSLAAASISFICRLLYHMSGQELAIRNIL
QLPRRAFESSKVRLVASAIHALDESHQLDSVVSSVRESLSSSKEIAALDFLATLGLLVKH
GSNNCLGVQKGVNYLRRALHVSPNSNLIRNLLGYLLLSSEEWKDVHISARCFIVDPSEHQ
KQEGVKSSVEIFGAGAVACCTVRSSKKTLPMFICRESLTSGCKTIQLLQKCVHQQPWDHT
SYYLLILNYLQKAREEKFPHNMCVVLERLISVALQNELYAKEDISYQYQKFQLLLCAAEV
GLQCGNNFNCIMHAKSALEMQLSDNYLFFAHLLLCRAYAVEGNYIGLHEEYVRCLELKTD
YHIGWICLKFLESQYKLHSDSSSLALAFQECCKEIKTSWNMWIAIYNLVQGLTAVLNGEF
IDAEESLAQACSLAGGESCLFLSHGAICMEIARQQSDSEFLSLAIRSLKEAKHSSSMPLP
FVSLLLAQAEASLGSESKWEKNLIEEWSSWPQEIRPAELFFQMHLLARRLTEGSGATSNL
EPSTSPLRWILEAIHMNPSCLRYWRALLKFME
NT seq
3519 nt
NT seq
+upstream
nt +downstream
nt
atgagtgaagaagacgatgctataagacggttagaagaagcagttgtggacaatccttcg
ctccactttgatctcggggtcttgttatgggacaagggaggagacattcaggaaaaagca
gctcagcattttctcatagcggcgaagcttaacccacaaaacggtgctgctttcagatat
ttggggcattactatgctcgagtggctgtcgactctcagagggctctcaagtgttatcag
agagccgtcaaccttaatcccgatgattcaattgcaggggaagaaatatgtaatatactg
gatggaagtggaaaagagagcttggagatagcggtatgccgcgaagcttcagagaagtca
cccagggccttttgggctttatgcagattgggttaccttttggtcaaccaaaagaagtgg
tccgaagcagtgcagagtcttcagcaagccattagaggctatcccacatgtgctgatttg
tgggaggctctgggtctttcctaccagcaaatgggcatgtttacagccgctgttaagtcc
tatgcaagagctattgaattggaggaatcaagagtatttgcattggtggaaagtggaaat
gtccatttgatgcttggttcgtttcgaaagggaatagagcagtttcggcaagctttacta
atctcacctctgaatttgtctgcgcatcatgggcttgcctctgcactccttagtttggca
aaggaatctattgattctggtgccttcaaatggggagcttcgctcttagaggaagcctcg
aaagtggctctagcaagtacttccattgttggcaatgtgtcttgttcttggaagctgcat
ggagatattcagctcatatacgcaaaatgttttccatggatggatgaaagattgggatca
ggagctgatgaaaaatcattcagtagttcaatcctgtcatggaggagaaactgctgctta
gcagccagatctgcttgtcgctcctaccagcgggctttgcatttgtccccttggcaagct
aatgtgtatactgatgttgccattgcatctgagcttcttttatcgttaaaggagaactgt
aaagatgacattaactcttggtttgtgtctgaaaagatgtgccttggaggcttattactt
gaaggttgcaatagcgaattttgggtagccttaggatgtttatctgatcattctgcattg
aaacaacatgctttcatacgggcgctgcagttggatgtttctcttgcagttgcatgggca
catcttggaaagctttatcggctggagggggaaagtcaattggctcagctagcatttgat
cgtgcaagaagtattgatccttcactttcattgccatgggcaggcatgtcagctgatgct
gatgcaaggaatctgaaaccagacgaggcttatgagtgctgtcttcgggcggttcagatc
tttccacttgcagaattccaaactggtctagttaagcttgctctgcagtctggttatctg
cgatcttcagaggcatttggagccatccaacaggctttgcagcgtgcacctcagtatcct
gaatctcacaatctgaaagggctagtttgtgaggcacgaggtgattatgaaagtgctgtt
gcctcgtatagactggcacgccttgctgccagagtttttgcaggaagagtttcaaaatcg
tatccagcagatatatctattaatttgaccaggtcgctttgtatggcaggaaatgctgat
gcagctatccaagaatgtaaatatttggaaaacaaaggtcttctggatgtagaaggcttg
cagctttatgcgctttcttattggaaacttggcaagtatgaccttgctctttcagtggca
aaaagactggcctcatctactttaccaacagaacattcgttggctgctgcatccatcagt
ttcatctgtcgattactgtatcatatgtcagggcaggaattagctattagaaacattttg
caactgcccagaagagcattcgagagttcaaaagttaggcttgtagcatctgctattcat
gcattagatgaaagtcatcagcttgactcagttgtttcaagtgttcgtgagtctctttca
tctagcaaagagattgctgcactggatttcctagccacacttggcttactagtcaaacat
ggatctaacaactgcttaggagttcagaagggagtcaattatctaagaagagctcttcat
gtttctccaaacagtaatttgataaggaaccttcttggttatctgttattatccagcgaa
gaatggaaagacgttcacatttcagctcgatgcttcatagtggatccttctgaacatcag
aagcaggaaggtgttaaatccagtgttgagatttttggtgctggagcagttgcgtgctgt
actgtgaggagcagcaagaagacattacccatgttcatctgtagagaaagtttgacatcg
gggtgcaaaacaatccagctgctgcagaagtgtgtccatcagcagccttgggaccatact
tcctattacctgcttatactaaactatctgcaaaaggcgcgggaggagaaatttccgcat
aacatgtgtgttgttcttgagcggttaataagtgtggctcttcaaaatgagctttatgcg
aaggaagatatttcataccaataccaaaagttccagcttctgctttgtgctgcggaggtt
ggtttgcaatgtgggaataatttcaattgcattatgcatgcaaaaagtgctctagagatg
cagctttcagataactatctcttctttgcacacttgctactgtgtcgtgcctatgctgtg
gaaggtaattatattgggcttcatgaagagtacgttaggtgcttggagctcaaaactgat
tatcatattggttggatttgcctcaagtttcttgaaagtcaatacaagctgcactcagat
tccagttcactagccttggcctttcaagagtgttgcaaggagataaagacttcgtggaac
atgtggattgctatatataatttggttcaaggtctaactgcagttttgaatggggaattt
attgacgcagaagagtcacttgcgcaagcttgctcgttagctggtggcgagagttgcctt
tttctcagccatggtgctatttgcatggagattgccagacaacagtccgattcagagttt
ctatcacttgctattagaagtctgaaggaagcaaaacatagttcttcgatgccgttaccc
tttgtctcactactactggcgcaagcagaagctagcctcggctctgaatcaaagtgggaa
aaaaacctcattgaggaatggtcatcttggccacaagagattaggcctgctgaactattt
ttccagatgcatttgcttgctagacggctgacagaaggttctggagctacatccaatctg
gagccatcaacaagtcctctaagatggatacttgaagcaatccatatgaatccgtcttgt
ttgagatactggagagctttgttgaaatttatggagtaa
DBGET
integrated database retrieval system
